Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30853.Seq
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1772 + 29411874-29413218,29413355-29413421,29413749-294138...    30   1.6  
09_06_0365 - 22582467-22583524,22584407-22584641,22585474-225856...    29   3.7  
06_01_0313 - 2250312-2250516,2250585-2250610,2250792-2251076,225...    27   8.6  
03_05_0769 - 27579251-27579934                                         27   8.6  
01_06_0852 + 32463784-32463834,32463957-32464628,32465515-324656...    27   8.6  

>07_03_1772 +
           29411874-29413218,29413355-29413421,29413749-29413896,
           29415293-29415416,29416340-29416590,29416923-29418449,
           29418786-29418896,29419576-29419734,29419827-29421734
          Length = 1879

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/53 (30%), Positives = 29/53 (54%)
 Frame = +1

Query: 349 QKQVAICNYVCN*VVFLSIDNIGKHS*LHITQTIKTSSSSACISPLLDVNLSH 507
           +K V   N+    VV   +D + +H+ +  TQ  +  SSS+  SPLL + +++
Sbjct: 500 EKPVTTRNHAYAEVVVFVLDQMTRHTQVTSTQRKQARSSSSSASPLLSLRITY 552


>09_06_0365 -
           22582467-22583524,22584407-22584641,22585474-22585684,
           22585775-22585848,22585943-22586092
          Length = 575

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 468 SLYLSTAGCKPLPYPPQ*TILYLSHPI 548
           S  L   GC+ LP PP   I +L+H I
Sbjct: 88  SCLLKAIGCRELPIPPHMDIYHLTHEI 114


>06_01_0313 -
           2250312-2250516,2250585-2250610,2250792-2251076,
           2251289-2251567,2251817-2252121,2252581-2252860,
           2253209-2253475
          Length = 548

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +1

Query: 118 DEKNPPHSIEDFVIEVEKGYTLNAQNCWIAALL 216
           DE+ PP S +D +  +E G +    +C++ +L+
Sbjct: 180 DEEGPPDSSQDILKFLENGLSRTYNDCFVESLI 212


>03_05_0769 - 27579251-27579934
          Length = 227

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +1

Query: 58  TLMGVFYYIRAVALLEDLPFDEKNPPHSIEDF-VIEVEKGYTLNAQNC 198
           TL GV   +  V LL+  P    N P  ++DF V +++   TLN   C
Sbjct: 7   TLAGV---VLVVLLLQQAPVLRANDPDPLQDFCVADLDSEVTLNGYPC 51


>01_06_0852 +
           32463784-32463834,32463957-32464628,32465515-32465627,
           32465999-32466261,32466803-32466924,32467176-32467253,
           32467353-32467409,32467590-32467658,32467903-32467947,
           32468303-32468398
          Length = 521

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 548 NWMRKVEDRSLWRIWER 498
           NW RK E+  +W  W+R
Sbjct: 218 NWRRKSEENEMWSRWQR 234


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,011,415
Number of Sequences: 37544
Number of extensions: 308665
Number of successful extensions: 728
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)