Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30853.Seq
         (598 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC062705-1|AAH62705.1|   98|Homo sapiens similar to DNA segment,...    72   1e-12
BC051802-1|AAH51802.1|   98|Homo sapiens similar to DNA segment,...    72   1e-12
BC095436-1|AAH95436.1|  108|Homo sapiens MGC71993 protein protein.     41   0.004
Z97652-1|CAM26430.1| 1462|Homo sapiens intraflagellar transport ...    32   1.8  
Z97633-1|CAM26352.1| 1462|Homo sapiens intraflagellar transport ...    32   1.8  
BC035577-1|AAH35577.1| 1462|Homo sapiens intraflagellar transpor...    32   1.8  
AL133297-1|CAM26447.1| 1462|Homo sapiens intraflagellar transpor...    32   1.8  
AL031719-1|CAM26410.1| 1462|Homo sapiens intraflagellar transpor...    32   1.8  
AL031705-1|CAM26342.1| 1462|Homo sapiens intraflagellar transpor...    32   1.8  
AE006467-11|AAK61285.1| 1462|Homo sapiens KIAA0590 protein.            32   1.8  
AB011162-1|BAA25516.2| 1468|Homo sapiens KIAA0590 protein protein.     32   1.8  

>BC062705-1|AAH62705.1|   98|Homo sapiens similar to DNA segment,
           Chr 11, Brigham & Womens Genetics 0434 expressed
           protein.
          Length = 98

 Score = 72.1 bits (169), Expect = 1e-12
 Identities = 35/85 (41%), Positives = 53/85 (62%)
 Frame = +1

Query: 1   GPKLSLCGLVLSVWGIIQLTLMGVFYYIRAVALLEDLPFDEKNPPHSIEDFVIEVEKGYT 180
           GPKL+ CG+VLS WG+I L ++G+F+ + +  L+ED+PF EK+     E+    +   Y 
Sbjct: 8   GPKLAACGIVLSAWGVIMLIMLGIFFNVHSAVLIEDVPFTEKD----FENGPQNIYNLYE 63

Query: 181 LNAQNCWIAALLYLITLVVSGHQFC 255
             + NC+IAA LYL+   + G  FC
Sbjct: 64  QVSYNCFIAAGLYLL---LGGFSFC 85


>BC051802-1|AAH51802.1|   98|Homo sapiens similar to DNA segment,
           Chr 11, Brigham & Womens Genetics 0434 expressed
           protein.
          Length = 98

 Score = 72.1 bits (169), Expect = 1e-12
 Identities = 35/85 (41%), Positives = 53/85 (62%)
 Frame = +1

Query: 1   GPKLSLCGLVLSVWGIIQLTLMGVFYYIRAVALLEDLPFDEKNPPHSIEDFVIEVEKGYT 180
           GPKL+ CG+VLS WG+I L ++G+F+ + +  L+ED+PF EK+     E+    +   Y 
Sbjct: 8   GPKLAACGIVLSAWGVIMLIMLGIFFNVHSAVLIEDVPFTEKD----FENGPQNIYNLYE 63

Query: 181 LNAQNCWIAALLYLITLVVSGHQFC 255
             + NC+IAA LYL+   + G  FC
Sbjct: 64  QVSYNCFIAAGLYLL---LGGFSFC 85


>BC095436-1|AAH95436.1|  108|Homo sapiens MGC71993 protein protein.
          Length = 108

 Score = 40.7 bits (91), Expect = 0.004
 Identities = 22/65 (33%), Positives = 37/65 (56%)
 Frame = +1

Query: 61  LMGVFYYIRAVALLEDLPFDEKNPPHSIEDFVIEVEKGYTLNAQNCWIAALLYLITLVVS 240
           ++G+F+ + +  L+ED+PF EK+     E+    +   Y   + NC+IAA LYL+   + 
Sbjct: 38  MLGIFFNVHSAVLIEDVPFTEKD----FENGPQNIYNLYEQVSYNCFIAAGLYLL---LG 90

Query: 241 GHQFC 255
           G  FC
Sbjct: 91  GFSFC 95


>Z97652-1|CAM26430.1| 1462|Homo sapiens intraflagellar transport 140
            homolog (Chlamydomonas) protein.
          Length = 1462

 Score = 31.9 bits (69), Expect = 1.8
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = -3

Query: 545  WMRKVEDRSLWRIWERFTSSSGEIQA 468
            ++ K++D++LWR W ++  S GE+ A
Sbjct: 948  YVNKMKDKTLWRWWAQYLESQGEMDA 973


>Z97633-1|CAM26352.1| 1462|Homo sapiens intraflagellar transport 140
            homolog (Chlamydomonas) protein.
          Length = 1462

 Score = 31.9 bits (69), Expect = 1.8
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = -3

Query: 545  WMRKVEDRSLWRIWERFTSSSGEIQA 468
            ++ K++D++LWR W ++  S GE+ A
Sbjct: 948  YVNKMKDKTLWRWWAQYLESQGEMDA 973


>BC035577-1|AAH35577.1| 1462|Homo sapiens intraflagellar transport 140
            homolog (Chlamydomonas) protein.
          Length = 1462

 Score = 31.9 bits (69), Expect = 1.8
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = -3

Query: 545  WMRKVEDRSLWRIWERFTSSSGEIQA 468
            ++ K++D++LWR W ++  S GE+ A
Sbjct: 948  YVNKMKDKTLWRWWAQYLESQGEMDA 973


>AL133297-1|CAM26447.1| 1462|Homo sapiens intraflagellar transport 140
            homolog (Chlamydomonas) protein.
          Length = 1462

 Score = 31.9 bits (69), Expect = 1.8
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = -3

Query: 545  WMRKVEDRSLWRIWERFTSSSGEIQA 468
            ++ K++D++LWR W ++  S GE+ A
Sbjct: 948  YVNKMKDKTLWRWWAQYLESQGEMDA 973


>AL031719-1|CAM26410.1| 1462|Homo sapiens intraflagellar transport 140
            homolog (Chlamydomonas) protein.
          Length = 1462

 Score = 31.9 bits (69), Expect = 1.8
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = -3

Query: 545  WMRKVEDRSLWRIWERFTSSSGEIQA 468
            ++ K++D++LWR W ++  S GE+ A
Sbjct: 948  YVNKMKDKTLWRWWAQYLESQGEMDA 973


>AL031705-1|CAM26342.1| 1462|Homo sapiens intraflagellar transport 140
            homolog (Chlamydomonas) protein.
          Length = 1462

 Score = 31.9 bits (69), Expect = 1.8
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = -3

Query: 545  WMRKVEDRSLWRIWERFTSSSGEIQA 468
            ++ K++D++LWR W ++  S GE+ A
Sbjct: 948  YVNKMKDKTLWRWWAQYLESQGEMDA 973


>AE006467-11|AAK61285.1| 1462|Homo sapiens KIAA0590 protein.
          Length = 1462

 Score = 31.9 bits (69), Expect = 1.8
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = -3

Query: 545  WMRKVEDRSLWRIWERFTSSSGEIQA 468
            ++ K++D++LWR W ++  S GE+ A
Sbjct: 948  YVNKMKDKTLWRWWAQYLESQGEMDA 973


>AB011162-1|BAA25516.2| 1468|Homo sapiens KIAA0590 protein protein.
          Length = 1468

 Score = 31.9 bits (69), Expect = 1.8
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = -3

Query: 545  WMRKVEDRSLWRIWERFTSSSGEIQA 468
            ++ K++D++LWR W ++  S GE+ A
Sbjct: 954  YVNKMKDKTLWRWWAQYLESQGEMDA 979


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,827,043
Number of Sequences: 237096
Number of extensions: 1767332
Number of successful extensions: 6830
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 6748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6827
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6324506272
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)