Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30853.Seq
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68227-10|CAA92515.1|   95|Caenorhabditis elegans Hypothetical p...    69   3e-12
U97593-4|AAB52877.2|   93|Caenorhabditis elegans Hypothetical pr...    55   3e-08
Z83128-7|CAB05634.2|  243|Caenorhabditis elegans Hypothetical pr...    28   4.4  
Z73899-8|CAA98079.2|  669|Caenorhabditis elegans Hypothetical pr...    28   4.4  
U41995-2|AAA83460.1|  317|Caenorhabditis elegans Serpentine rece...    28   4.4  
U41556-3|AAM51519.1|  378|Caenorhabditis elegans Cysteine protea...    28   4.4  
U41556-2|ABS19475.1|  369|Caenorhabditis elegans Cysteine protea...    28   4.4  
U41556-1|AAK39189.1|  379|Caenorhabditis elegans Cysteine protea...    28   4.4  
U29157-1|AAA68423.4|  675|Caenorhabditis elegans Hypothetical pr...    28   4.4  
L39939-1|AAA98789.1|  379|Caenorhabditis elegans cathepsin B-lik...    28   4.4  
L39894-1|AAA98787.1|  379|Caenorhabditis elegans cathepsin B-lik...    28   4.4  
Z75953-1|CAB00098.1|  400|Caenorhabditis elegans Hypothetical pr...    27   7.7  
U11245-1|AAA96833.1|  198|Caenorhabditis elegans cysteine protea...    27   7.7  
L22447-1|AAB00354.1|  133|Caenorhabditis elegans cysteine protea...    27   7.7  

>Z68227-10|CAA92515.1|   95|Caenorhabditis elegans Hypothetical
           protein F49C12.12 protein.
          Length = 95

 Score = 68.9 bits (161), Expect = 3e-12
 Identities = 36/78 (46%), Positives = 49/78 (62%)
 Frame = +1

Query: 1   GPKLSLCGLVLSVWGIIQLTLMGVFYYIRAVALLEDLPFDEKNPPHSIEDFVIEVEKGYT 180
           GPK+S   +V+SVWG+I L L+GVF+YI+AV L  DL F+       +   VI+ +  Y 
Sbjct: 9   GPKMSAFCMVMSVWGVIFLGLLGVFFYIQAVTLFPDLHFEGHG---KVPSSVIDAK--YN 63

Query: 181 LNAQNCWIAALLYLITLV 234
             A  CWIAA LY +TL+
Sbjct: 64  EKATQCWIAAGLYAVTLI 81


>U97593-4|AAB52877.2|   93|Caenorhabditis elegans Hypothetical
           protein C46G7.1 protein.
          Length = 93

 Score = 55.2 bits (127), Expect = 3e-08
 Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
 Frame = +1

Query: 1   GPKLSLCGLVLSVWGIIQLTLMGVFYYIRAVALLEDLPFDEKNPPHSI-EDFVIEVEKGY 177
           GP  +   L L++WG + + ++G  +Y ++V L EDLP + K    S+  D      K Y
Sbjct: 3   GPMCTGIFLFLALWGTVFMAILGGLFYNQSVGLFEDLPKESKAMEKSLWADRTTNFNKLY 62

Query: 178 TLNAQNCWIAALLYLITLVVSGHQFC*II 264
             NA NCWIA  +Y+   V+   + C ++
Sbjct: 63  QQNAYNCWIACGVYIGIAVLLSLRACCLV 91


>Z83128-7|CAB05634.2|  243|Caenorhabditis elegans Hypothetical
           protein W01D2.3 protein.
          Length = 243

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +1

Query: 133 PHSIEDFVIEVEKGYTLNAQNCWIAALLYLITLVV 237
           PHS E    E+E+ +    ++C+  AL  L+TLV+
Sbjct: 81  PHSYELLFREIERVFGRRREHCFYGALGVLLTLVL 115


>Z73899-8|CAA98079.2|  669|Caenorhabditis elegans Hypothetical
           protein ZK829.10 protein.
          Length = 669

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 187 AQNCWIAALLYLITLVVSGHQFC*IIVPQLVCNIEGV 297
           A N W+   LY  TLVV G + C +I+  +   I  +
Sbjct: 360 AANSWLWVFLYYSTLVVVGWKSCALIMKTITVTIADI 396


>U41995-2|AAA83460.1|  317|Caenorhabditis elegans Serpentine
           receptor, class x protein46 protein.
          Length = 317

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = -2

Query: 270 RNDYSAKLMSRYNQCNQVQQCRNPTILCIQGISFFHFNDEVFDRMRRIFL 121
           +ND  +K M+    C  VQ C    +  I+ I +F  +  V D   R F+
Sbjct: 200 KNDAKSKQMNSKEICFLVQTCLQGVLFSIELICYFIISPRVEDTWVRFFM 249


>U41556-3|AAM51519.1|  378|Caenorhabditis elegans Cysteine protease
           related protein6, isoform b protein.
          Length = 378

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 456 IVIVSLYLSTAGCKPLPYPP 515
           IV  S Y +  GCKP P+PP
Sbjct: 190 IVTGSNYTANNGCKPYPFPP 209


>U41556-2|ABS19475.1|  369|Caenorhabditis elegans Cysteine protease
           related protein6, isoform c protein.
          Length = 369

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 456 IVIVSLYLSTAGCKPLPYPP 515
           IV  S Y +  GCKP P+PP
Sbjct: 181 IVTGSNYTANNGCKPYPFPP 200


>U41556-1|AAK39189.1|  379|Caenorhabditis elegans Cysteine protease
           related protein6, isoform a protein.
          Length = 379

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 456 IVIVSLYLSTAGCKPLPYPP 515
           IV  S Y +  GCKP P+PP
Sbjct: 191 IVTGSNYTANNGCKPYPFPP 210


>U29157-1|AAA68423.4|  675|Caenorhabditis elegans Hypothetical
           protein C34D10.2 protein.
          Length = 675

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -2

Query: 228 CNQVQQCRNPTILCIQGISF-FHFNDEVFDRMRRIFLIKW 112
           C + +QCR P  LC QG +  F+ N +  DR R   L K+
Sbjct: 199 CYKTEQCRKPARLCRQGYACPFYHNSK--DRRRPPALYKY 236


>L39939-1|AAA98789.1|  379|Caenorhabditis elegans cathepsin B-like
           cysteine proteinaseprotein.
          Length = 379

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 456 IVIVSLYLSTAGCKPLPYPP 515
           IV  S Y +  GCKP P+PP
Sbjct: 191 IVTGSNYTANNGCKPYPFPP 210


>L39894-1|AAA98787.1|  379|Caenorhabditis elegans cathepsin B-like
           cysteine proteinaseprotein.
          Length = 379

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 456 IVIVSLYLSTAGCKPLPYPP 515
           IV  S Y +  GCKP P+PP
Sbjct: 191 IVTGSNYTANNGCKPYPFPP 210


>Z75953-1|CAB00098.1|  400|Caenorhabditis elegans Hypothetical
           protein F57F5.1 protein.
          Length = 400

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +3

Query: 474 YLSTAGCKPLPYPP 515
           Y    GCKP PYPP
Sbjct: 239 YQDKTGCKPYPYPP 252


>U11245-1|AAA96833.1|  198|Caenorhabditis elegans cysteine protease
           protein.
          Length = 198

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +3

Query: 474 YLSTAGCKPLPYPP 515
           Y    GCKP PYPP
Sbjct: 67  YQDKTGCKPYPYPP 80


>L22447-1|AAB00354.1|  133|Caenorhabditis elegans cysteine protease
           protein.
          Length = 133

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +3

Query: 474 YLSTAGCKPLPYPP 515
           Y    GCKP PYPP
Sbjct: 67  YQDKTGCKPYPYPP 80


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,193,377
Number of Sequences: 27780
Number of extensions: 288842
Number of successful extensions: 769
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)