Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30851.Seq
         (528 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47363| Best HMM Match : No HMM Matches (HMM E-Value=.)              98   3e-21
SB_228| Best HMM Match : SAM_1 (HMM E-Value=10)                        34   0.083
SB_3614| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.1  
SB_35353| Best HMM Match : Arm (HMM E-Value=6.6e-27)                   28   4.1  
SB_45788| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_6980| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.6  

>SB_47363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score = 98.3 bits (234), Expect = 3e-21
 Identities = 45/54 (83%), Positives = 50/54 (92%)
 Frame = +3

Query: 255 AISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARGQ 416
           AISK+L+A+YQKYVDE SKKEI+DILVQYDRSLLVADPRR E KKFGGPGAR +
Sbjct: 48  AISKSLVAYYQKYVDEVSKKEIRDILVQYDRSLLVADPRRTEAKKFGGPGARSR 101



 Score = 59.7 bits (138), Expect(2) = 9e-10
 Identities = 26/41 (63%), Positives = 33/41 (80%)
 Frame = +1

Query: 145 KLQEPILLLGKEKFSMVXIRVTVKGGGHVAQVYAIRQLFQR 267
           K++EPILLLGKE+F  V IRV VKGGGH +++YAIRQ   +
Sbjct: 11  KVEEPILLLGKERFEGVDIRVRVKGGGHTSRIYAIRQAISK 51



 Score = 20.6 bits (41), Expect(2) = 9e-10
 Identities = 8/9 (88%), Positives = 9/9 (100%)
 Frame = +1

Query: 19 QAVQVFGRK 45
          Q+VQVFGRK
Sbjct: 3  QSVQVFGRK 11


>SB_228| Best HMM Match : SAM_1 (HMM E-Value=10)
          Length = 119

 Score = 33.9 bits (74), Expect = 0.083
 Identities = 16/48 (33%), Positives = 29/48 (60%)
 Frame = +3

Query: 237 SLRYQTAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCE 380
           +++++T +   L AF QKY+D   +KE     +Q+ + +LV+  R CE
Sbjct: 43  AVKHKTHVDTVL-AFRQKYLDNFGRKETSKRFLQFAQGVLVSLARECE 89


>SB_3614| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = -1

Query: 189 REFFLAEQKDRFLKFVLQQSGLNQ--VQWAP 103
           R F   + KDR+LK  L++ G  Q   QW P
Sbjct: 12  RSFLFTQDKDRYLKAGLKKYGYGQWTAQWVP 42


>SB_35353| Best HMM Match : Arm (HMM E-Value=6.6e-27)
          Length = 513

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/16 (68%), Positives = 14/16 (87%)
 Frame = +3

Query: 222 WSCSTSLRYQTAISKA 269
           WSCSTS+R +T+I KA
Sbjct: 155 WSCSTSMRNRTSIFKA 170


>SB_45788| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 165

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +3

Query: 81  SWNAACKRAPIGLG*AQTAAVQTSGTYPFARQGKILYG 194
           SW  A K+ P G G  ++     +G Y   R G+  YG
Sbjct: 19  SWQNAEKKKPAGFGRGRSKRGYVNGNYEARRPGERSYG 56


>SB_6980| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 521

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -1

Query: 456 DGFLEGLTVRFLVSGHGHLDH-RTSWA 379
           DGF++  T+ +L+   G+L H R  WA
Sbjct: 44  DGFIDDKTLDYLIINGGYLSHSRCGWA 70


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,176,733
Number of Sequences: 59808
Number of extensions: 379777
Number of successful extensions: 1070
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1070
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1197191618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)