Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30851.Seq
(528 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC071674-1|AAH71674.1| 152|Homo sapiens RPS16 protein protein. 133 5e-34
M60854-1|AAA60583.1| 146|Homo sapiens RPS16 protein. 140 2e-33
BC007977-1|AAH07977.1| 146|Homo sapiens ribosomal protein S16 p... 140 2e-33
BC004324-1|AAH04324.1| 146|Homo sapiens ribosomal protein S16 p... 140 2e-33
AB061841-1|BAB79479.1| 146|Homo sapiens ribosomal protein S16 p... 140 2e-33
AK097937-1|BAC85106.1| 178|Homo sapiens protein ( Homo sapiens ... 91 2e-18
BC064361-1|AAH64361.1| 1056|Homo sapiens pleckstrin homology dom... 36 0.088
AK074103-1|BAB84929.1| 628|Homo sapiens FLJ00174 protein protein. 36 0.088
AJ002220-1|CAB91652.1| 926|Homo sapiens protein ( Homo sapiens ... 36 0.088
AB002354-1|BAA20813.2| 1058|Homo sapiens KIAA0356 protein protein. 36 0.088
BC057240-1|AAH57240.1| 396|Homo sapiens mitochondrial ribosomal... 35 0.15
BC047784-1|AAH47784.1| 302|Homo sapiens MRPS9 protein protein. 35 0.15
BC054882-1|AAH54882.1| 204|Homo sapiens Unknown (protein for IM... 30 5.8
AL391827-3|CAI16232.1| 689|Homo sapiens novel protein protein. 30 5.8
AL391827-2|CAI16231.1| 198|Homo sapiens novel protein protein. 30 5.8
>BC071674-1|AAH71674.1| 152|Homo sapiens RPS16 protein protein.
Length = 152
Score = 133 bits (322), Expect(2) = 5e-34
Identities = 59/81 (72%), Positives = 73/81 (90%)
Frame = +1
Query: 13 PIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSM 192
P+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL+++EPR LQYKL EP+LLLGKE+F+
Sbjct: 6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAG 65
Query: 193 VXIRVTVKGGGHVAQVYAIRQ 255
V IRV VKGGGHVAQ+Y Q
Sbjct: 66 VDIRVRVKGGGHVAQIYGESQ 86
Score = 30.7 bits (66), Expect(2) = 5e-34
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +1
Query: 277 PSTRNM*TKPQRRKSKTS*YNTIGVCW 357
P TRNM + RR+SKTS + G CW
Sbjct: 126 PITRNMWMRLPRRRSKTSSSSMTGPCW 152
>M60854-1|AAA60583.1| 146|Homo sapiens RPS16 protein.
Length = 146
Score = 140 bits (340), Expect = 2e-33
Identities = 78/146 (53%), Positives = 101/146 (69%), Gaps = 5/146 (3%)
Frame = +1
Query: 13 PIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSM 192
P+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL+++EPR LQYKL EP+LLLGKE+F+
Sbjct: 6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAG 65
Query: 193 VXIRVTVKGGGHVAQVYAIRQLFQRL*SPSTRNM*TKPQRRKSKTS*YNTIGVCWWLTRV 372
V IRV VKGGGHVAQ+YAIRQ + + + +++ K I + + T +
Sbjct: 66 VDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIK-----DILIQYDRTLL 120
Query: 373 AASPR---SSVVQVP--VARYQKSYR 435
A PR S P ARYQKSYR
Sbjct: 121 VADPRRCESKKFGGPGARARYQKSYR 146
>BC007977-1|AAH07977.1| 146|Homo sapiens ribosomal protein S16
protein.
Length = 146
Score = 140 bits (340), Expect = 2e-33
Identities = 78/146 (53%), Positives = 101/146 (69%), Gaps = 5/146 (3%)
Frame = +1
Query: 13 PIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSM 192
P+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL+++EPR LQYKL EP+LLLGKE+F+
Sbjct: 6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAG 65
Query: 193 VXIRVTVKGGGHVAQVYAIRQLFQRL*SPSTRNM*TKPQRRKSKTS*YNTIGVCWWLTRV 372
V IRV VKGGGHVAQ+YAIRQ + + + +++ K I + + T +
Sbjct: 66 VDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIK-----DILIQYDRTLL 120
Query: 373 AASPR---SSVVQVP--VARYQKSYR 435
A PR S P ARYQKSYR
Sbjct: 121 VADPRRCESKKFGGPGARARYQKSYR 146
>BC004324-1|AAH04324.1| 146|Homo sapiens ribosomal protein S16
protein.
Length = 146
Score = 140 bits (340), Expect = 2e-33
Identities = 78/146 (53%), Positives = 101/146 (69%), Gaps = 5/146 (3%)
Frame = +1
Query: 13 PIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSM 192
P+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL+++EPR LQYKL EP+LLLGKE+F+
Sbjct: 6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAG 65
Query: 193 VXIRVTVKGGGHVAQVYAIRQLFQRL*SPSTRNM*TKPQRRKSKTS*YNTIGVCWWLTRV 372
V IRV VKGGGHVAQ+YAIRQ + + + +++ K I + + T +
Sbjct: 66 VDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIK-----DILIQYDRTLL 120
Query: 373 AASPR---SSVVQVP--VARYQKSYR 435
A PR S P ARYQKSYR
Sbjct: 121 VADPRRCESKKFGGPGARARYQKSYR 146
>AB061841-1|BAB79479.1| 146|Homo sapiens ribosomal protein S16
protein.
Length = 146
Score = 140 bits (340), Expect = 2e-33
Identities = 78/146 (53%), Positives = 101/146 (69%), Gaps = 5/146 (3%)
Frame = +1
Query: 13 PIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSM 192
P+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL+++EPR LQYKL EP+LLLGKE+F+
Sbjct: 6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAG 65
Query: 193 VXIRVTVKGGGHVAQVYAIRQLFQRL*SPSTRNM*TKPQRRKSKTS*YNTIGVCWWLTRV 372
V IRV VKGGGHVAQ+YAIRQ + + + +++ K I + + T +
Sbjct: 66 VDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIK-----DILIQYDRTLL 120
Query: 373 AASPR---SSVVQVP--VARYQKSYR 435
A PR S P ARYQKSYR
Sbjct: 121 VADPRRCESKKFGGPGARARYQKSYR 146
>AK097937-1|BAC85106.1| 178|Homo sapiens protein ( Homo sapiens
cDNA FLJ40618 fis, clone THYMU2013089, moderately
similar to 40S RIBOSOMAL PROTEIN S16. ).
Length = 178
Score = 91.1 bits (216), Expect = 2e-18
Identities = 51/132 (38%), Positives = 70/132 (53%)
Frame = +1
Query: 16 IQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMV 195
+Q+VQ+F K+ A AV C+ G G +R+N PL+++ LQYKL E LLL KE+ + +
Sbjct: 18 LQSVQIFTYKEMAIAVVLCRCGSGFIRMNEGPLEMIRLLTLQYKLLELGLLLDKEQLAGM 77
Query: 196 XIRVTVKGGGHVAQVYAIRQLFQRL*SPSTRNM*TKPQRRKSKTS*YNTIGVCWWLTRVA 375
I V VKG GHV Q+YA+ Q + P + T CWW T VA
Sbjct: 78 DIHVRVKGSGHVVQIYAVLQYISKALVPCYPKYVDEASEEIKDT----LTRPCWWFTPVA 133
Query: 376 ASPRSSVVQVPV 411
+PR+ VPV
Sbjct: 134 MNPRNLQALVPV 145
>BC064361-1|AAH64361.1| 1056|Homo sapiens pleckstrin homology domain
containing, family M (with RUN domain) member 1 protein.
Length = 1056
Score = 35.9 bits (79), Expect = 0.088
Identities = 23/56 (41%), Positives = 28/56 (50%)
Frame = -1
Query: 300 RLHISGRRRSEPLK*LSDSVNLCYMTTTLDCHSDXNHREFFLAEQKDRFLKFVLQQ 133
R+H+ GRRR E LK L D + LC + NHR + L E RF LQQ
Sbjct: 914 RMHLIGRRR-EQLKLLGDYLGLCRSGALKELSKRLNHRNYLL-ESPHRFSVADLQQ 967
>AK074103-1|BAB84929.1| 628|Homo sapiens FLJ00174 protein protein.
Length = 628
Score = 35.9 bits (79), Expect = 0.088
Identities = 23/56 (41%), Positives = 28/56 (50%)
Frame = -1
Query: 300 RLHISGRRRSEPLK*LSDSVNLCYMTTTLDCHSDXNHREFFLAEQKDRFLKFVLQQ 133
R+H+ GRRR E LK L D + LC + NHR + L E RF LQQ
Sbjct: 486 RMHLIGRRR-EQLKLLGDYLGLCRSGALKELSKRLNHRNYLL-ESPHRFSVADLQQ 539
>AJ002220-1|CAB91652.1| 926|Homo sapiens protein ( Homo sapiens B2
gene partial cDNA, clone B2E. ).
Length = 926
Score = 35.9 bits (79), Expect = 0.088
Identities = 23/56 (41%), Positives = 28/56 (50%)
Frame = -1
Query: 300 RLHISGRRRSEPLK*LSDSVNLCYMTTTLDCHSDXNHREFFLAEQKDRFLKFVLQQ 133
R+H+ GRRR E LK L D + LC + NHR + L E RF LQQ
Sbjct: 784 RMHLIGRRR-EQLKLLGDYLGLCRSGALKELSKRLNHRNYLL-ESPHRFSVADLQQ 837
>AB002354-1|BAA20813.2| 1058|Homo sapiens KIAA0356 protein protein.
Length = 1058
Score = 35.9 bits (79), Expect = 0.088
Identities = 23/56 (41%), Positives = 28/56 (50%)
Frame = -1
Query: 300 RLHISGRRRSEPLK*LSDSVNLCYMTTTLDCHSDXNHREFFLAEQKDRFLKFVLQQ 133
R+H+ GRRR E LK L D + LC + NHR + L E RF LQQ
Sbjct: 916 RMHLIGRRR-EQLKLLGDYLGLCRSGALKELSKRLNHRNYLL-ESPHRFSVADLQQ 969
>BC057240-1|AAH57240.1| 396|Homo sapiens mitochondrial ribosomal
protein S9 protein.
Length = 396
Score = 35.1 bits (77), Expect = 0.15
Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +1
Query: 37 GRKKTATAVAYC-KRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVXIRVTV 213
G++KTA A A K G G ++VNG L P + Q + Q ++ + TV
Sbjct: 274 GKRKTAKAEAIVYKHGSGRIKVNGIDYQLYFP-ITQDREQLMFPFHFVDRLGKHDVTCTV 332
Query: 214 KGGGHVAQVYAIR 252
GGG AQ AIR
Sbjct: 333 SGGGRSAQAGAIR 345
>BC047784-1|AAH47784.1| 302|Homo sapiens MRPS9 protein protein.
Length = 302
Score = 35.1 bits (77), Expect = 0.15
Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +1
Query: 37 GRKKTATAVAYC-KRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVXIRVTV 213
G++KTA A A K G G ++VNG L P + Q + Q ++ + TV
Sbjct: 180 GKRKTAKAEAIVYKHGSGRIKVNGIDYQLYFP-ITQDREQLMFPFHFVDRLGKHDVTCTV 238
Query: 214 KGGGHVAQVYAIR 252
GGG AQ AIR
Sbjct: 239 SGGGRSAQAGAIR 251
>BC054882-1|AAH54882.1| 204|Homo sapiens Unknown (protein for
IMAGE:6451327) protein.
Length = 204
Score = 29.9 bits (64), Expect = 5.8
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +3
Query: 303 ASKKEIKD-ILVQYDRSLLVADPRRCEPK 386
ASKK +K+ +++ YD + DP +C P+
Sbjct: 16 ASKKPLKEKVVLMYDEIFMTEDPSKCSPR 44
>AL391827-3|CAI16232.1| 689|Homo sapiens novel protein protein.
Length = 689
Score = 29.9 bits (64), Expect = 5.8
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +3
Query: 303 ASKKEIKD-ILVQYDRSLLVADPRRCEPK 386
ASKK +K+ +++ YD + DP +C P+
Sbjct: 16 ASKKPLKEKVVLMYDEIFMTEDPSKCSPR 44
>AL391827-2|CAI16231.1| 198|Homo sapiens novel protein protein.
Length = 198
Score = 29.9 bits (64), Expect = 5.8
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +3
Query: 303 ASKKEIKD-ILVQYDRSLLVADPRRCEPK 386
ASKK +K+ +++ YD + DP +C P+
Sbjct: 16 ASKKPLKEKVVLMYDEIFMTEDPSKCSPR 44
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,878,190
Number of Sequences: 237096
Number of extensions: 1898898
Number of successful extensions: 4993
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 4860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4983
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 5103531180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -