Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30851.Seq
(528 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78413-6|CAB01658.1| 144|Caenorhabditis elegans Hypothetical pr... 126 1e-29
Z93372-4|CAB07546.1| 301|Caenorhabditis elegans Hypothetical pr... 31 0.51
AF410936-1|AAL05561.1| 348|Caenorhabditis elegans ephrin EFN-4 ... 30 1.2
AF038619-2|AAB92075.2| 348|Caenorhabditis elegans Eph(f)rin pro... 30 1.2
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 28 3.6
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 28 3.6
AF003138-1|AAK21371.3| 469|Caenorhabditis elegans Hypothetical ... 28 4.8
Z78062-3|CAB01496.1| 1232|Caenorhabditis elegans Hypothetical pr... 27 6.3
Z70754-10|CAA94779.2| 273|Caenorhabditis elegans Hypothetical p... 27 6.3
Z70753-13|CAA94770.2| 273|Caenorhabditis elegans Hypothetical p... 27 6.3
Z36282-1|CAD45602.1| 424|Caenorhabditis elegans Hypothetical pr... 27 6.3
AF455271-1|AAL65193.1| 424|Caenorhabditis elegans C21ORF80 prot... 27 6.3
AC006769-14|AAF60579.1| 378|Caenorhabditis elegans Hypothetical... 27 6.3
>Z78413-6|CAB01658.1| 144|Caenorhabditis elegans Hypothetical
protein T01C3.6 protein.
Length = 144
Score = 126 bits (304), Expect = 1e-29
Identities = 69/145 (47%), Positives = 94/145 (64%), Gaps = 5/145 (3%)
Frame = +1
Query: 16 IQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMV 195
+Q+VQ FGRKKTATAVA+CK+G G+++VNGRPL+ +EP++L+ KLQEP+LL+GKE+F V
Sbjct: 5 VQSVQTFGRKKTATAVAHCKKGQGLIKVNGRPLEFLEPQILRIKLQEPLLLVGKERFQDV 64
Query: 196 XIRVTVKGGGHVAQVYAIRQLFQRL*SPSTRNM*TKPQRRKSKTS*YNTIGVCWWLTRVA 375
IR+ V GGGHVAQ+YA+RQ + + +R+ K I + + +
Sbjct: 65 DIRIRVSGGGHVAQIYAVRQALAKALVAYYHKYVDEQSKRELK-----NIFAAYDKSLLV 119
Query: 376 ASPR---SSVVQVP--VARYQKSYR 435
A PR S P ARYQKSYR
Sbjct: 120 ADPRRRESKKFGGPGARARYQKSYR 144
>Z93372-4|CAB07546.1| 301|Caenorhabditis elegans Hypothetical
protein BE10.4 protein.
Length = 301
Score = 31.1 bits (67), Expect = 0.51
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 291 YVDEASKKEIKDILVQYDRSLLVADPRRCE 380
+ DE +KE+ D+ QYDRS+ + D R E
Sbjct: 151 FCDEVQQKEVGDLFHQYDRSIEIIDKVRHE 180
>AF410936-1|AAL05561.1| 348|Caenorhabditis elegans ephrin EFN-4
protein.
Length = 348
Score = 29.9 bits (64), Expect = 1.2
Identities = 18/61 (29%), Positives = 26/61 (42%)
Frame = -1
Query: 231 YMTTTLDCHSDXNHREFFLAEQKDRFLKFVLQQSGLNQVQWAPVYTQHSMTTLAIRNCGG 52
YMTT+ + NHR + L E ++ L + S + + AP Q T A G
Sbjct: 148 YMTTSTGKANGTNHRMYGLCESQNMRLSMKVSASQPHPTRRAPTRRQEDFVTTASAELMG 207
Query: 51 G 49
G
Sbjct: 208 G 208
>AF038619-2|AAB92075.2| 348|Caenorhabditis elegans Eph(f)rin
protein 4 protein.
Length = 348
Score = 29.9 bits (64), Expect = 1.2
Identities = 18/61 (29%), Positives = 26/61 (42%)
Frame = -1
Query: 231 YMTTTLDCHSDXNHREFFLAEQKDRFLKFVLQQSGLNQVQWAPVYTQHSMTTLAIRNCGG 52
YMTT+ + NHR + L E ++ L + S + + AP Q T A G
Sbjct: 148 YMTTSTGKANGTNHRMYGLCESQNMRLSMKVSASQPHPTRRAPTRRQEDFVTTASAELMG 207
Query: 51 G 49
G
Sbjct: 208 G 208
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 28.3 bits (60), Expect = 3.6
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Frame = -1
Query: 225 TTTLDCHSDXNHREFFLAEQKD-RF--LKFVLQQSG 127
TT LDC + H EF+ AE D RF + F+ +Q G
Sbjct: 146 TTFLDCLMEQTHPEFYRAEDADARFTDILFIEKQRG 181
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 28.3 bits (60), Expect = 3.6
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Frame = -1
Query: 225 TTTLDCHSDXNHREFFLAEQKD-RF--LKFVLQQSG 127
TT LDC + H EF+ AE D RF + F+ +Q G
Sbjct: 21 TTFLDCLMEQTHPEFYRAEDADARFTDILFIEKQRG 56
>AF003138-1|AAK21371.3| 469|Caenorhabditis elegans Hypothetical
protein F12B6.3 protein.
Length = 469
Score = 27.9 bits (59), Expect = 4.8
Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Frame = +1
Query: 334 YNT--IGVCWWLTRVAASPRSSVVQVPVARYQKSYR*AFKKTIGWYRXGVVLSLRYHWG 504
YNT + V W V P S+ ++RY+ S K WYR V +G
Sbjct: 178 YNTASVSVNWMANPVTVLPEISLADFDLSRYRTSRHTEVYKAGEWYRLTVEFEFTRKYG 236
>Z78062-3|CAB01496.1| 1232|Caenorhabditis elegans Hypothetical protein
F16D3.4 protein.
Length = 1232
Score = 27.5 bits (58), Expect = 6.3
Identities = 12/46 (26%), Positives = 26/46 (56%)
Frame = +1
Query: 88 MLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVXIRVTVKGGG 225
++ + P+D + R + ++L+ P+L LG E + + + + V GG
Sbjct: 1004 LMNIYSEPMDFISDRTV-FQLK-PLLDLGSEYYEQLILGIVVSAGG 1047
>Z70754-10|CAA94779.2| 273|Caenorhabditis elegans Hypothetical
protein F40F9.9 protein.
Length = 273
Score = 27.5 bits (58), Expect = 6.3
Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Frame = -1
Query: 513 YVTTPMISQ*QHDAXTIPPDGFLEGLTVRFLVS--GH---GHLDHRTSWARSDAGQPP 355
YV T S Q+ A I F G T+ LV+ GH GH + SWA + AG+ P
Sbjct: 59 YVGTMQASLFQY-ADGILHAAFAHGFTIFILVTAFGHISGGHFNPAVSWAIAGAGKMP 115
>Z70753-13|CAA94770.2| 273|Caenorhabditis elegans Hypothetical
protein F40F9.9 protein.
Length = 273
Score = 27.5 bits (58), Expect = 6.3
Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Frame = -1
Query: 513 YVTTPMISQ*QHDAXTIPPDGFLEGLTVRFLVS--GH---GHLDHRTSWARSDAGQPP 355
YV T S Q+ A I F G T+ LV+ GH GH + SWA + AG+ P
Sbjct: 59 YVGTMQASLFQY-ADGILHAAFAHGFTIFILVTAFGHISGGHFNPAVSWAIAGAGKMP 115
>Z36282-1|CAD45602.1| 424|Caenorhabditis elegans Hypothetical
protein K10G9.3 protein.
Length = 424
Score = 27.5 bits (58), Expect = 6.3
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = +3
Query: 219 WWSCSTSLRYQTAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKK--F 392
+W S+RY + AF +KY+D K+ D++ LV D + +P++
Sbjct: 230 YWKARRSMRYSNDLVDVADAFRKKYLDSDDKR---------DKTKLVDDWTKEKPRRTAI 280
Query: 393 GGP 401
GGP
Sbjct: 281 GGP 283
>AF455271-1|AAL65193.1| 424|Caenorhabditis elegans C21ORF80
protein.
Length = 424
Score = 27.5 bits (58), Expect = 6.3
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = +3
Query: 219 WWSCSTSLRYQTAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKK--F 392
+W S+RY + AF +KY+D K+ D++ LV D + +P++
Sbjct: 230 YWKARRSMRYSNDLVDVADAFRKKYLDSDDKR---------DKTKLVDDWTKEKPRRTAI 280
Query: 393 GGP 401
GGP
Sbjct: 281 GGP 283
>AC006769-14|AAF60579.1| 378|Caenorhabditis elegans Hypothetical
protein Y45G12C.1 protein.
Length = 378
Score = 27.5 bits (58), Expect = 6.3
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +2
Query: 113 WTWLSPDCCSTNFRNLSFCSARKNSLWLXSE*QSRVVVM*HKFTLSDSY 259
WT S D C N +N + R N WL + ++V + H+ +L D Y
Sbjct: 74 WTGKSYDFCYRNPKNATLVGKRFNCTWLSTLEDLKLVGL-HEQSLVDLY 121
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,186,501
Number of Sequences: 27780
Number of extensions: 270049
Number of successful extensions: 681
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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