Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30850.Seq
(382 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S... 30 0.11
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 30 0.14
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 29 0.19
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 1.3
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr... 26 1.7
SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn... 25 3.0
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 4.0
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch... 25 4.0
SPAC1834.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 5.3
SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyc... 25 5.3
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ... 24 7.0
SPAC23C11.17 |||mitochondrial inner membrane protein involved in... 24 7.0
SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|c... 24 7.0
>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 673
Score = 30.3 bits (65), Expect = 0.11
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = -1
Query: 295 CSSLSRNILRRASESGLFYGHSVTAFDSVFLLLRTESSS 179
CS L+ N+L S SG+ +GH+ D++++ + T S +
Sbjct: 293 CSFLNHNLLSLCSPSGVLFGHN--DIDTIYVYILTHSGT 329
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 29.9 bits (64), Expect = 0.14
Identities = 21/60 (35%), Positives = 30/60 (50%)
Frame = -1
Query: 253 SGLFYGHSVTAFDSVFLLLRTESSSGSDIRWTVLSHSTQTTFLRHGSSCSMESISQKSSS 74
SG+ + F SV +L + +SS S ++ S ST +TF S+ S SIS SS
Sbjct: 562 SGISSSSIPSTFSSVSSILSSSTSSPSSTSLSISSSSTSSTF-SSASTSSPSSISSSISS 620
>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 488
Score = 29.5 bits (63), Expect = 0.19
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = -1
Query: 313 HISKIDCSSLSRNILRRASESGLFYGHSVTAFDSVFLLLRTESSSGSDIRW 161
H +++ C S +R++L S SG + H V + L+ SS + W
Sbjct: 262 HQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAW 312
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.6 bits (56), Expect = 1.3
Identities = 24/75 (32%), Positives = 35/75 (46%)
Frame = -1
Query: 292 SSLSRNILRRASESGLFYGHSVTAFDSVFLLLRTESSSGSDIRWTVLSHSTQTTFLRHGS 113
SS S + +S+S + +V++ S T SSS S + SHS+ + H S
Sbjct: 351 SSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRPASSSSHSSSLS--SHKS 408
Query: 112 SCSMESISQKSSSLF 68
S S +S S SS F
Sbjct: 409 SSSSKSSSAPVSSAF 423
>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1516
Score = 26.2 bits (55), Expect = 1.7
Identities = 10/43 (23%), Positives = 24/43 (55%)
Frame = -1
Query: 211 VFLLLRTESSSGSDIRWTVLSHSTQTTFLRHGSSCSMESISQK 83
+F + SSS +W ++ +S + +L+ G+ ++E ++ K
Sbjct: 276 IFYQILAGSSSEQLEKWKLVENSQEFNYLKQGNCSTIEGVNDK 318
>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 3.0
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -3
Query: 278 KHSPPCFRIWSXLRTLRNSIRFRLF 204
+H PP R+W +RT+ NS R +
Sbjct: 130 EHLPPSIRLWDVIRTI-NSFNPRTY 153
>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 452
Score = 25.0 bits (52), Expect = 4.0
Identities = 18/74 (24%), Positives = 31/74 (41%)
Frame = -1
Query: 349 NNHFLRDSLKLLHISKIDCSSLSRNILRRASESGLFYGHSVTAFDSVFLLLRTESSSGSD 170
NN+F+ D + +S S N +S + FY +S ++ S T SS+ ++
Sbjct: 319 NNYFMTDVKSSSVVIVQSETSCSINSASMSSNTTYFYWNSTSSLSSSVFTNTTSSSNSTN 378
Query: 169 IRWTVLSHSTQTTF 128
S TT+
Sbjct: 379 SSIPTTYPSNSTTY 392
>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 845
Score = 25.0 bits (52), Expect = 4.0
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -3
Query: 281 EKHSPPCFRIWSXLRTLRNSIRFRLFAA 198
E P C ++ L T R+S RFRLF A
Sbjct: 335 ETTPPSCEVSYNLLLTCRSSNRFRLFPA 362
>SPAC1834.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 178
Score = 24.6 bits (51), Expect = 5.3
Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 1/101 (0%)
Frame = -1
Query: 328 SLKLLHISKIDCSSLSRNILRRASESGLFYGHSVTAFDSVFLLLRTESSSGSDIRWTVLS 149
++K I + + + ++ GL G T VFL T S S + I W S
Sbjct: 36 NIKKFSIGSLGLTYMISPVMLLLDAGGLSLG---TRMSMVFLACTTTSLSTAIIHWAAKS 92
Query: 148 HSTQTTFLRHGSSCSMESI-SQKSSSLFP*TKMHIAQNNKN 29
+ ++ T + S + +I +K S + K+ I N +
Sbjct: 93 YVSEATLKGNVLSLNTFNILGKKRLSQYTLDKLKIPDTNNS 133
>SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 413
Score = 24.6 bits (51), Expect = 5.3
Identities = 7/15 (46%), Positives = 9/15 (60%)
Frame = -3
Query: 269 PPCFRIWSXLRTLRN 225
PPC R+W RT +
Sbjct: 128 PPCIRVWKMARTFNS 142
>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
Length = 533
Score = 24.2 bits (50), Expect = 7.0
Identities = 14/54 (25%), Positives = 26/54 (48%)
Frame = -2
Query: 288 AFRETFSAVLPNLVXFTDTP*QHSIPSFCCLGQSPVLALISDGQSSATVHKPPS 127
+F +T S +P++ + QH IP SP+L+ S ++S + + S
Sbjct: 321 SFIDTNSPSMPSISSVSSYQQQHRIPKLNASNYSPLLSPSSHRKTSGNLSRTGS 374
>SPAC23C11.17 |||mitochondrial inner membrane protein involved in
potassium ion transport|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 24.2 bits (50), Expect = 7.0
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = -2
Query: 123 GTDPLVQWNLFHR 85
GTDPL+++N+ HR
Sbjct: 303 GTDPLLRYNIRHR 315
>SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 683
Score = 24.2 bits (50), Expect = 7.0
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = -1
Query: 292 SSLSRNILRRASESGLFYGHSVTAFDSVFLLLRTESSSGSDIRWTVLS 149
SS RN+ AS SG+ +G+S + LRT+ I +VLS
Sbjct: 323 SSFQRNLDFVASASGVGFGNSAGVEKNKPYALRTDEVDNDRILPSVLS 370
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,617,241
Number of Sequences: 5004
Number of extensions: 32180
Number of successful extensions: 118
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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