Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30850.Seq
(382 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0491 - 18283404-18283482,18283590-18283658,18283767-182838... 29 1.2
02_05_0958 + 33073302-33073442,33073839-33073913,33074382-330744... 29 1.2
04_03_0772 - 19438910-19439209,19439692-19439828,19441334-194415... 28 2.2
09_03_0096 + 12328116-12329561,12329810-12329852,12332119-123322... 27 3.8
06_01_1066 - 8656108-8657622 27 3.8
07_03_0831 - 21810002-21810319,21810423-21810573,21810660-218108... 27 5.0
11_06_0277 + 21843658-21845220,21846533-21846718,21847037-218471... 27 6.6
02_02_0421 - 10042184-10042197,10042442-10042822,10044158-100442... 27 6.6
03_02_0552 + 9416362-9417790,9417827-9417936,9418032-9418484 26 8.7
01_01_0270 - 2225250-2225263,2225549-2225732,2225817-2225972,222... 26 8.7
>10_08_0491 -
18283404-18283482,18283590-18283658,18283767-18283883,
18283953-18284068,18284149-18284223,18284248-18284430,
18284530-18284591,18284668-18285606,18285723-18285846,
18285917-18286060,18286151-18286225,18286359-18286382,
18287025-18287095,18287305-18287407,18287555-18287781,
18287910-18288027,18288220-18288311,18288793-18288874
Length = 899
Score = 29.1 bits (62), Expect = 1.2
Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 8/78 (10%)
Frame = -1
Query: 313 HISKIDCSSLSRNILR--------RASESGLFYGHSVTAFDSVFLLLRTESSSGSDIRWT 158
H S ++C R R + S SGL +FDS ++ +SSG+ W
Sbjct: 33 HASDVNCVKFGRKTSRILITGGEDQKSLSGLTSPVESVSFDSSEAMIGAGASSGTIKIWD 92
Query: 157 VLSHSTQTTFLRHGSSCS 104
V TF H SSC+
Sbjct: 93 VDEAKVVRTFTGHRSSCA 110
>02_05_0958 +
33073302-33073442,33073839-33073913,33074382-33074497,
33076863-33076977,33077100-33077228,33078907-33078954,
33079343-33079469,33079634-33079789,33080031-33080287,
33080431-33080580,33080660-33080714,33080793-33081088,
33081252-33081335,33081869-33081941,33082164-33082291,
33082905-33083090,33083179-33083316,33083394-33083519,
33083705-33083965
Length = 886
Score = 29.1 bits (62), Expect = 1.2
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Frame = +3
Query: 51 CILVYGNSEDDFCEIDSIEQ---EDPCRRKVVCVLWLRTVHLISEPELDSVLSSKKTESN 221
C+ VYG+ +DD + S+ D ++ V ++ L ++ +SE EL ++ E +
Sbjct: 669 CLTVYGSKDDDDLALKSLSNININDQSKQASVSLI-LDSLKDLSEAELSTIRKQLLEEFS 727
Query: 222 AVTECP 239
A CP
Sbjct: 728 ADDACP 733
>04_03_0772 -
19438910-19439209,19439692-19439828,19441334-19441570,
19441948-19442149,19442761-19442858,19443082-19443665,
19443725-19443882
Length = 571
Score = 28.3 bits (60), Expect = 2.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 45 AMCILVYGNSEDDFCEIDSIEQEDPC 122
A C+ V G S DD CE ++ +D C
Sbjct: 83 AACLGVIGGSGDDLCEKAAVRYDDRC 108
>09_03_0096 +
12328116-12329561,12329810-12329852,12332119-12332237,
12333326-12333853
Length = 711
Score = 27.5 bits (58), Expect = 3.8
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = +3
Query: 120 CRRKVVCVLWLRTVHLISEPELDSVLSSKKTESNAVTECP*XRPDSEARRRMF 278
C+R+ CV+ L+ H ++ V +K+ E V CP E R R+F
Sbjct: 659 CKREEACVILLQCAH-----QVLCVGCNKRHEEKGVARCPCCNAKVEERIRVF 706
>06_01_1066 - 8656108-8657622
Length = 504
Score = 27.5 bits (58), Expect = 3.8
Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 6/106 (5%)
Frame = -1
Query: 373 PFIVTLKYNNHFLRDSLKLLHISKIDCSS------LSRNILRRASESGLFYGHSVTAFDS 212
P + N LR ++ +H+S + CS+ ++RN+L+ A+ G H+
Sbjct: 197 PSFADMVVNRFKLRGDVRAVHLSGMGCSAGLIAVEVARNLLQAAAPRG---AHA------ 247
Query: 211 VFLLLRTESSSGSDIRWTVLSHSTQTTFLRHGSSCSMESISQKSSS 74
L++ TE++S S T S T R G + S S+ S++
Sbjct: 248 --LVVSTETTSFSHYAGTSRSMLLPTALFRMGGVAMLLSTSRSSAT 291
>07_03_0831 -
21810002-21810319,21810423-21810573,21810660-21810897,
21811011-21811221,21811336-21811559,21811696-21811806,
21813265-21813636,21813810-21814782
Length = 865
Score = 27.1 bits (57), Expect = 5.0
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = -1
Query: 235 HSVTAFDSVFLLLRTESSSGSDIRWTVLSHSTQT 134
H++T D L++ ++G+D+ W H T T
Sbjct: 129 HTLTIRDDGNLVISGSDAAGTDVEWESFHHPTDT 162
>11_06_0277 +
21843658-21845220,21846533-21846718,21847037-21847165,
21847256-21847415,21847846-21847955,21848038-21848247,
21848473-21848730,21848810-21848885,21849217-21849350,
21849928-21850007,21850265-21850316
Length = 985
Score = 26.6 bits (56), Expect = 6.6
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +3
Query: 39 FCAMCILVYGN-SEDDFCEIDSIEQE 113
FC + +L G DD CE++SI+ E
Sbjct: 565 FCCLKLLASGKLGNDDLCEVNSIDVE 590
>02_02_0421 -
10042184-10042197,10042442-10042822,10044158-10044261,
10044634-10044734,10044806-10045147,10045981-10046158,
10047696-10047776,10049190-10049449
Length = 486
Score = 26.6 bits (56), Expect = 6.6
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = -2
Query: 201 CLGQSPVLALISDGQSSATVHKPPSCGTDPLVQWNLFHRNHLHCFRK 61
C G +A+ +SS +++ P T PL++ N +N L RK
Sbjct: 300 CTGFGGDIAINYQSKSSEMIYRSPLANTIPLIEVNDLVKNALVACRK 346
>03_02_0552 + 9416362-9417790,9417827-9417936,9418032-9418484
Length = 663
Score = 26.2 bits (55), Expect = 8.7
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = -1
Query: 322 KLLHISKID-CSSLSRNILRRASESGLFYGHSVTAFDSVFLLLRTES 185
K++ + K+D CSSLS R S + F + + D V LL TES
Sbjct: 34 KIVVLDKLDYCSSLSNLNPSRPSPNFKFVKGDIASADLVNYLLTTES 80
>01_01_0270 -
2225250-2225263,2225549-2225732,2225817-2225972,
2226276-2226374,2226489-2226563,2226682-2226750,
2226917-2227115,2227492-2227597,2228118-2228526
Length = 436
Score = 26.2 bits (55), Expect = 8.7
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = -1
Query: 235 HSVTAFDSVFLLLRTESSSGSDI 167
HS+T D V L +TE SGSDI
Sbjct: 294 HSLTEGDFVSLAYQTEGFSGSDI 316
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,403,082
Number of Sequences: 37544
Number of extensions: 210612
Number of successful extensions: 621
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 624784784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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