Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30850.Seq
(382 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52413| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.73
SB_45897| Best HMM Match : Peptidase_C50 (HMM E-Value=2.7e-08) 28 2.2
SB_8486| Best HMM Match : Granulin (HMM E-Value=0) 28 2.9
SB_25165| Best HMM Match : Prominin (HMM E-Value=1.1e-05) 27 5.2
SB_12157| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.2
SB_38674| Best HMM Match : TIR (HMM E-Value=2.5e-31) 27 5.2
SB_4646| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.8
SB_36861| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.0
SB_27164| Best HMM Match : CBM_14 (HMM E-Value=1.1e-05) 26 9.0
SB_17383| Best HMM Match : LytTR (HMM E-Value=2.4) 26 9.0
SB_7372| Best HMM Match : Rad17 (HMM E-Value=2.7e-09) 26 9.0
>SB_52413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 838
Score = 29.9 bits (64), Expect = 0.73
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -2
Query: 147 TVHKPPSCGTDPLVQWNLFHRNHLHCFRKLKCTLHK 40
T K PS DPL++W LF N L C++ + ++K
Sbjct: 453 TYAKAPS-KFDPLLKWELFRYNELDCWQTILKRMYK 487
>SB_45897| Best HMM Match : Peptidase_C50 (HMM E-Value=2.7e-08)
Length = 1907
Score = 28.3 bits (60), Expect = 2.2
Identities = 14/31 (45%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Frame = +1
Query: 262 HGGECFSKGYCS--QSLIYEEASDCPEGNDC 348
HG ECFS GYC+ Q L E G C
Sbjct: 533 HGSECFSIGYCAYKQDLFMEATCLMSVGCQC 563
>SB_8486| Best HMM Match : Granulin (HMM E-Value=0)
Length = 878
Score = 27.9 bits (59), Expect = 2.9
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 280 SKGYCSQSLIYEEASDCPEGNDCCIL 357
+K ++ ++AS CP+GN CC L
Sbjct: 188 NKNILGTTVCPDKASKCPDGNTCCKL 213
Score = 27.9 bits (59), Expect = 2.9
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +1
Query: 313 EEASDCPEGNDCCIL 357
+E S CP+GN CC L
Sbjct: 424 DETSQCPDGNTCCKL 438
Score = 27.5 bits (58), Expect = 3.9
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +1
Query: 319 ASDCPEGNDCCIL 357
AS+CP+GN CC L
Sbjct: 276 ASECPDGNTCCKL 288
>SB_25165| Best HMM Match : Prominin (HMM E-Value=1.1e-05)
Length = 726
Score = 27.1 bits (57), Expect = 5.2
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 107 TRGSVPQEGGLCTVAEDCPSD 169
TRGSV GG C +A+D SD
Sbjct: 406 TRGSVSNMGGNCLMADDDDSD 426
>SB_12157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 377
Score = 27.1 bits (57), Expect = 5.2
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = +2
Query: 116 SVPQEGGLCTVAEDCPSDIRARTGLCPKQQKDGIECCYGVSVKXTR 253
S P T + P+ R P Q +CC+GVS++ R
Sbjct: 305 SAPPTSTTSTASTARPNIQTNRLSTAPLVQSGSTDCCFGVSLRINR 350
>SB_38674| Best HMM Match : TIR (HMM E-Value=2.5e-31)
Length = 870
Score = 27.1 bits (57), Expect = 5.2
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -3
Query: 359 TKIQQSFPSGQSEASSYIKD*LQ*PFEKHSPP 264
+KI +F S S+ +S++++ LQ E H PP
Sbjct: 715 SKIYDTFISYSSQDASWVRETLQRTLESHVPP 746
>SB_4646| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 329
Score = 26.6 bits (56), Expect = 6.8
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = +2
Query: 134 GLCTVAEDCPSDIRARTGLCPKQQKDGIECCYGVSVKXTRFGST 265
G + E CP R +CP+ +D +E C V G+T
Sbjct: 87 GTRDMLEMCPRGTRDMLVMCPRFNRDMLETCPRVKDSAAYLGTT 130
>SB_36861| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 791
Score = 26.2 bits (55), Expect = 9.0
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = -1
Query: 352 YNNHFLRDSLKLLHISKIDCSSLSRNILRRASESGLF 242
++ H L KL H S DC NI+ R +G +
Sbjct: 672 FSRHLLDLLEKLSHYSTTDCEHQMLNIIARLDHNGFY 708
>SB_27164| Best HMM Match : CBM_14 (HMM E-Value=1.1e-05)
Length = 85
Score = 26.2 bits (55), Expect = 9.0
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Frame = +3
Query: 24 MKFLLFCAMCILVYGNSEDDFC-EIDSIEQEDP--CRRKVVCVLWLRTVH-LISEPELDS 191
MK L+ C V ++DDFC E D+ DP C + C + RT H + S+ S
Sbjct: 8 MKNLVLLIACFSVGLANDDDFCKEKDAGHYTDPADCAKFYQCDGFHRTFHRMCSDVPKWS 67
Query: 192 VLSS 203
V+ S
Sbjct: 68 VMKS 71
>SB_17383| Best HMM Match : LytTR (HMM E-Value=2.4)
Length = 536
Score = 26.2 bits (55), Expect = 9.0
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 125 QEGGLCTVAEDCPSDIRARTGLCPKQQKDGIECCY 229
++GG AE+C S A G P++ ++G CY
Sbjct: 362 EDGGSLRPAENCGSPRLAENGGSPQRAENGGSPCY 396
>SB_7372| Best HMM Match : Rad17 (HMM E-Value=2.7e-09)
Length = 421
Score = 26.2 bits (55), Expect = 9.0
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = -2
Query: 261 LPNLVXFTDTP*QHSI-PSFCCLGQSPVLALISDG-QSSATVHK 136
LPN + F D+ H + S+ G+SPV+ +ISD + VH+
Sbjct: 198 LPN-IFFRDSKKFHEVLQSYQSAGRSPVVLIISDSHHGDSNVHR 240
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,219,072
Number of Sequences: 59808
Number of extensions: 237020
Number of successful extensions: 793
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 644574580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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