Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30850.Seq
         (382 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021471-1|CAA16295.1|  241|Caenorhabditis elegans Hypothetical ...    31   0.28 
U64857-3|AAM29666.1| 1487|Caenorhabditis elegans Hypothetical pr...    29   0.85 
U64857-2|AAC25867.1| 1558|Caenorhabditis elegans Hypothetical pr...    29   0.85 
U64857-1|AAC25868.1| 2167|Caenorhabditis elegans Hypothetical pr...    29   0.85 
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p...    28   2.0  
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p...    28   2.0  
AL132872-3|CAB60759.1|  103|Caenorhabditis elegans Hypothetical ...    28   2.0  
AC006633-3|AAK68375.1|  227|Caenorhabditis elegans Hypothetical ...    28   2.0  
Z81595-8|CAB54305.1|  345|Caenorhabditis elegans Hypothetical pr...    27   3.4  
Z81595-7|CAB54304.1|  358|Caenorhabditis elegans Hypothetical pr...    27   3.4  
Z30423-10|CAA83014.1|  216|Caenorhabditis elegans Hypothetical p...    27   3.4  
U40419-9|AAA81429.2| 1715|Caenorhabditis elegans Hypothetical pr...    27   4.5  
AF016684-7|AAB66206.1|  319|Caenorhabditis elegans Hypothetical ...    27   4.5  
Z77659-4|CAB01163.1|  507|Caenorhabditis elegans Hypothetical pr...    27   6.0  
U53141-8|AAA96110.3|  572|Caenorhabditis elegans Prion-like-(q/n...    27   6.0  
AF101319-3|AAC69355.1|  331|Caenorhabditis elegans Hypothetical ...    26   7.9  
AF045644-4|AAC02599.1|  211|Caenorhabditis elegans Onchocerca re...    26   7.9  

>AL021471-1|CAA16295.1|  241|Caenorhabditis elegans Hypothetical
           protein Y17D7C.1 protein.
          Length = 241

 Score = 31.1 bits (67), Expect = 0.28
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 9   SEHVIMKFLLFCAMCILVYGN 71
           S+H+   FLLFC  C +VYG+
Sbjct: 88  SQHICRHFLLFCLQCRVVYGD 108


>U64857-3|AAM29666.1| 1487|Caenorhabditis elegans Hypothetical
           protein C37C3.6c protein.
          Length = 1487

 Score = 29.5 bits (63), Expect = 0.85
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = +2

Query: 122 PQEGGLCTVAEDCPSDIRARTGLCPKQQKDGI-ECCYGVS-VKXTRFGSTAENVS 280
           P E   C V +DCP+ + +  G CP        E  +G S    T FG  A+NV+
Sbjct: 690 PSEKQDCNV-DDCPTCVDSEFGCCPDNSTFATGEFNFGCSNCSETEFGCCADNVT 743


>U64857-2|AAC25867.1| 1558|Caenorhabditis elegans Hypothetical
           protein C37C3.6a protein.
          Length = 1558

 Score = 29.5 bits (63), Expect = 0.85
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = +2

Query: 122 PQEGGLCTVAEDCPSDIRARTGLCPKQQKDGI-ECCYGVS-VKXTRFGSTAENVS 280
           P E   C V +DCP+ + +  G CP        E  +G S    T FG  A+NV+
Sbjct: 690 PSEKQDCNV-DDCPTCVDSEFGCCPDNSTFATGEFNFGCSNCSETEFGCCADNVT 743


>U64857-1|AAC25868.1| 2167|Caenorhabditis elegans Hypothetical
           protein C37C3.6b protein.
          Length = 2167

 Score = 29.5 bits (63), Expect = 0.85
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = +2

Query: 122 PQEGGLCTVAEDCPSDIRARTGLCPKQQKDGI-ECCYGVS-VKXTRFGSTAENVS 280
           P E   C V +DCP+ + +  G CP        E  +G S    T FG  A+NV+
Sbjct: 690 PSEKQDCNV-DDCPTCVDSEFGCCPDNSTFATGEFNFGCSNCSETEFGCCADNVT 743


>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical protein
             K07E12.1a protein.
          Length = 13100

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +2

Query: 152   EDCPSDIRARTGLCPKQ--QKDGIECCYGVSVKXTRFGSTAE 271
             ++CP  ++A  G CPK    KDG   CY +    T  G  +E
Sbjct: 12962 DECPCKVKAHGGRCPKGYIAKDG--QCYDIDECETNNGQCSE 13001


>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin protein.
          Length = 13100

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +2

Query: 152   EDCPSDIRARTGLCPKQ--QKDGIECCYGVSVKXTRFGSTAE 271
             ++CP  ++A  G CPK    KDG   CY +    T  G  +E
Sbjct: 12962 DECPCKVKAHGGRCPKGYIAKDG--QCYDIDECETNNGQCSE 13001


>AL132872-3|CAB60759.1|  103|Caenorhabditis elegans Hypothetical
           protein Y116F11A.6 protein.
          Length = 103

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 16/51 (31%), Positives = 29/51 (56%)
 Frame = -1

Query: 337 LRDSLKLLHISKIDCSSLSRNILRRASESGLFYGHSVTAFDSVFLLLRTES 185
           LRDSL+ ++I  +    ++RN+LR      L+   S    D++  LL+T++
Sbjct: 24  LRDSLQQINIRDVVPLLVARNVLRSYEMGALYEKGSGEQVDALIDLLKTKN 74


>AC006633-3|AAK68375.1|  227|Caenorhabditis elegans Hypothetical
           protein F35B3.4 protein.
          Length = 227

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +2

Query: 158 CPSDIRARTGLCPKQQKDGIECCYGVSVKXTRFGS 262
           CP    A    C  Q +D  +CCY  SV  T  G+
Sbjct: 113 CPMQAAADIQYCAAQGQDHTDCCYRNSVGTTLAGN 147


>Z81595-8|CAB54305.1|  345|Caenorhabditis elegans Hypothetical
           protein T22H2.6b protein.
          Length = 345

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +1

Query: 313 EEASDCPEGNDCCIL 357
           ++AS CP+G+ CC+L
Sbjct: 181 DKASKCPDGSTCCLL 195


>Z81595-7|CAB54304.1|  358|Caenorhabditis elegans Hypothetical
           protein T22H2.6a protein.
          Length = 358

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +1

Query: 313 EEASDCPEGNDCCIL 357
           ++AS CP+G+ CC+L
Sbjct: 181 DKASKCPDGSTCCLL 195


>Z30423-10|CAA83014.1|  216|Caenorhabditis elegans Hypothetical
           protein T20G5.12 protein.
          Length = 216

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = +2

Query: 149 AEDCPSDIRARTGLCPKQQKDGIECCYGVSVKXTRFGS 262
           + +CP +       C  Q KD  +CC    V  T  GS
Sbjct: 120 SSECPIEFLPEMQFCAAQGKDHSQCCSQSQVDATTAGS 157


>U40419-9|AAA81429.2| 1715|Caenorhabditis elegans Hypothetical protein
            C27F2.8 protein.
          Length = 1715

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 21/75 (28%), Positives = 34/75 (45%)
 Frame = +3

Query: 33   LLFCAMCILVYGNSEDDFCEIDSIEQEDPCRRKVVCVLWLRTVHLISEPELDSVLSSKKT 212
            L+FC +C+L     E D     +I Q+    R V  +  L   +  + P + +V S+ K 
Sbjct: 1063 LIFCLVCVLACAYLEGDRAIAVAIRQQFAIPRHVFDLNNLNKNNSTTTP-VPTVPSTAKP 1121

Query: 213  ESNAVTECP*XRPDS 257
            ES+     P  RP +
Sbjct: 1122 ESSIKKPTPATRPST 1136


>AF016684-7|AAB66206.1|  319|Caenorhabditis elegans Hypothetical
           protein F45C12.7 protein.
          Length = 319

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 153 SATVHKPPSCGTDPLVQWNLFHRNHLHC 70
           S T+ KP  C     + WN+F  N+L C
Sbjct: 81  SITLDKPGQCYAQK-INWNVFDYNYLRC 107


>Z77659-4|CAB01163.1|  507|Caenorhabditis elegans Hypothetical
           protein F23B12.5 protein.
          Length = 507

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 265 GGECFSKGYCSQSLIYEEASDCPEGNDCCILV 360
           G E   +GY ++ LI E + D P G   CI+V
Sbjct: 122 GFETPEEGYLAKILIQEGSKDVPIGKLLCIIV 153


>U53141-8|AAA96110.3|  572|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 13
           protein.
          Length = 572

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = -2

Query: 219 SIPSFCCLGQSPVLALISDGQSSATVHKPPSCGTDPLVQWNL 94
           S  S C   Q P + ++ D QSS      PSC    +   NL
Sbjct: 362 SCESSCVQQQQPSVVVVQDSQSSCPSACQPSCSQQCIQAQNL 403


>AF101319-3|AAC69355.1|  331|Caenorhabditis elegans Hypothetical
           protein K08D9.5 protein.
          Length = 331

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 113 GSVPQEGGLCTVAEDCPSDIRARTGLCPKQQK 208
           GS+P    L T    C +D R+   LCP  +K
Sbjct: 256 GSLPGSDHLFTAISKCLADQRSEEQLCPNFEK 287


>AF045644-4|AAC02599.1|  211|Caenorhabditis elegans Onchocerca
           related antigen familyprotein 1 protein.
          Length = 211

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +2

Query: 113 GSVPQEGGLCTVAEDCPSDIRARTGLCPKQQKDGIEC 223
           G  P   GL    ED PSD++ +     K  K+G +C
Sbjct: 30  GRPPPPCGLPPFLEDLPSDVQTKITEIWKDYKEGDKC 66


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,177,366
Number of Sequences: 27780
Number of extensions: 189610
Number of successful extensions: 594
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 567749674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)