Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30850.Seq
         (382 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    29   0.014
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    29   0.014
U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor prot...    25   0.30 
AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin pr...    25   0.30 
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   6.5  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   6.5  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    20   8.5  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    20   8.5  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 29.5 bits (63), Expect = 0.014
 Identities = 15/52 (28%), Positives = 29/52 (55%)
 Frame = -1

Query: 358 LKYNNHFLRDSLKLLHISKIDCSSLSRNILRRASESGLFYGHSVTAFDSVFL 203
           L  + HF+R SL  L +S ++C+  S   +++ + +G  +G    ++ SV L
Sbjct: 32  LNQSLHFVRASLSNLDMSVLECADRSAPRVKKTASAGPIFGVIGGSYSSVSL 83


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 29.5 bits (63), Expect = 0.014
 Identities = 15/52 (28%), Positives = 29/52 (55%)
 Frame = -1

Query: 358 LKYNNHFLRDSLKLLHISKIDCSSLSRNILRRASESGLFYGHSVTAFDSVFL 203
           L  + HF+R SL  L +S ++C+  S   +++ + +G  +G    ++ SV L
Sbjct: 122 LNQSLHFVRASLSNLDMSVLECADRSAPRVKKTASAGPIFGVIGGSYSSVSL 173


>U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor
           protein.
          Length = 95

 Score = 25.0 bits (52), Expect = 0.30
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +3

Query: 33  LLFCAMCILVYGNSEDDFCEIDSIEQEDPC--RRKVVCVL 146
           LLF AM  ++    ED+F  ++  E E+     R+V C L
Sbjct: 9   LLFMAMVAIMAAPVEDEFEPLEHFENEERADRHRRVTCDL 48


>AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin
           precursor protein.
          Length = 95

 Score = 25.0 bits (52), Expect = 0.30
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +3

Query: 33  LLFCAMCILVYGNSEDDFCEIDSIEQEDPC--RRKVVCVL 146
           LLF AM  ++    ED+F  ++  E E+     R+V C L
Sbjct: 9   LLFMAMVAIMAAPVEDEFEPLEHFENEERADRHRRVTCDL 48


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -3

Query: 374 TVYCYTKIQQSFPSGQSEA 318
           T  C++ +  + PSGQ++A
Sbjct: 75  TAGCHSNLLSTSPSGQNKA 93


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -3

Query: 374 TVYCYTKIQQSFPSGQSEA 318
           T  C++ +  + PSGQ++A
Sbjct: 75  TAGCHSNLLSTSPSGQNKA 93


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = +1

Query: 283 KGYCSQSLIYEEASDCPEGNDC 348
           KG+  +S+       C  GN+C
Sbjct: 208 KGFFRRSITKNAVYQCKYGNNC 229


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = +1

Query: 283 KGYCSQSLIYEEASDCPEGNDC 348
           KG+  +S+       C  GN+C
Sbjct: 5   KGFFRRSITKNAVYQCKYGNNC 26


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,191
Number of Sequences: 438
Number of extensions: 2041
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9300375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)