Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30847.Seq
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50308-3|AAW88404.1| 1392|Caenorhabditis elegans Gut granule los...    31   0.60 
Z46241-8|CAA86316.2| 1784|Caenorhabditis elegans Hypothetical pr...    29   3.2  
U37430-2|AAL08045.2|  802|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z82080-8|CAD92382.3|  404|Caenorhabditis elegans Hypothetical pr...    28   7.4  
AL032625-7|CAN86642.1|  404|Caenorhabditis elegans Hypothetical ...    28   7.4  
AL023854-1|CAH60790.2|  404|Caenorhabditis elegans Hypothetical ...    28   7.4  
Z68299-5|CAI46584.1|  111|Caenorhabditis elegans Hypothetical pr...    27   9.8  
AL132862-23|CAB60559.1|  540|Caenorhabditis elegans Hypothetical...    27   9.8  

>U50308-3|AAW88404.1| 1392|Caenorhabditis elegans Gut granule loss
           protein 4 protein.
          Length = 1392

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +1

Query: 568 LECEIKAVAAGRAHTIILTD 627
           L C++  +A GRAHT++LTD
Sbjct: 878 LICKVTQIACGRAHTVVLTD 897


>Z46241-8|CAA86316.2| 1784|Caenorhabditis elegans Hypothetical
           protein C38D4.3 protein.
          Length = 1784

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
 Frame = -3

Query: 600 SRCHCFNLTLQALVRYINRCIAKQKFQRMISRGEWYPIWESVLIPVPKTL--CCSEVFIE 427
           +R +  +L +Q++VR +NR     +F   I   EWYP       P P  L  C   V I 
Sbjct: 699 ARKNSSSLPVQSVVRKMNRQAPNAQFWNDIPHDEWYP-------PTPLDLLECLLNVSIS 751

Query: 426 ATVKP*PQAMFVISNLSAKED 364
            ++K      +VI  +S   +
Sbjct: 752 ESIKRELVVQYVIDWISTSPE 772


>U37430-2|AAL08045.2|  802|Caenorhabditis elegans Hypothetical
           protein K09F5.6 protein.
          Length = 802

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = +1

Query: 391 NKHSLWLRFHSSLNKNFRAAQSFRYRYQYRFPNWIPFTTRNHPLELLLSYAPIYI 555
           N  S+W    ++L +++     F    +YR  N I + T  +P   L++YA IY+
Sbjct: 11  NLSSIWYTILTTLLQSYLLYLGFE---RYRLYNEIKWPTGGYPYGYLMAYATIYL 62


>Z82080-8|CAD92382.3|  404|Caenorhabditis elegans Hypothetical
           protein W09G3.7a protein.
          Length = 404

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +2

Query: 356 PMRSSFAERFDITNIACGYGFTVASIKTSEQHKVFGTGINTDSQIG 493
           P R ++     I  I+ G+GF++ + K    ++++G GIN   QIG
Sbjct: 57  PKRIAYFNTKSIKFISSGFGFSLFASK----NRLYGAGINNRFQIG 98


>AL032625-7|CAN86642.1|  404|Caenorhabditis elegans Hypothetical
           protein W09G3.7a protein.
          Length = 404

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +2

Query: 356 PMRSSFAERFDITNIACGYGFTVASIKTSEQHKVFGTGINTDSQIG 493
           P R ++     I  I+ G+GF++ + K    ++++G GIN   QIG
Sbjct: 57  PKRIAYFNTKSIKFISSGFGFSLFASK----NRLYGAGINNRFQIG 98


>AL023854-1|CAH60790.2|  404|Caenorhabditis elegans Hypothetical
           protein W09G3.7a protein.
          Length = 404

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +2

Query: 356 PMRSSFAERFDITNIACGYGFTVASIKTSEQHKVFGTGINTDSQIG 493
           P R ++     I  I+ G+GF++ + K    ++++G GIN   QIG
Sbjct: 57  PKRIAYFNTKSIKFISSGFGFSLFASK----NRLYGAGINNRFQIG 98


>Z68299-5|CAI46584.1|  111|Caenorhabditis elegans Hypothetical
          protein T04B2.8 protein.
          Length = 111

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 24 FALNTLDYYRYNLFFDCGMLGNLI 95
          F L  L+ + +NL F CG LG L+
Sbjct: 6  FGLEALNTFYFNLVFLCGFLGYLV 29


>AL132862-23|CAB60559.1|  540|Caenorhabditis elegans Hypothetical
           protein Y73F8A.30 protein.
          Length = 540

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
 Frame = -2

Query: 358 WMPNQFEVVFVTFFPFLATWEVDT---QSTCLSKSPHMTRLSVLLLIGYW 218
           W P  + ++  T  PF A W  DT    S  +++      ++V++   YW
Sbjct: 63  WNPYLYGMINTTILPFDAIWLPDTYLYNSVVMNREETERYINVVVTTNYW 112


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,180,322
Number of Sequences: 27780
Number of extensions: 339061
Number of successful extensions: 953
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 953
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)