Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30847.Seq
         (698 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g08710.1 68418.m01035 regulator of chromosome condensation (R...    31   0.73 
At1g67720.1 68414.m07728 leucine-rich repeat family protein / pr...    30   1.3  
At5g60870.2 68418.m07635 regulator of chromosome condensation (R...    29   2.2  
At5g60870.1 68418.m07636 regulator of chromosome condensation (R...    29   2.2  
At1g63740.1 68414.m07213 disease resistance protein (TIR-NBS-LRR...    29   3.0  
At1g19880.1 68414.m02493 regulator of chromosome condensation (R...    29   3.0  
At1g30930.1 68414.m03786 F-box family protein contains F-box dom...    29   3.9  
At3g07900.1 68416.m00965 expressed protein contains Pfam PF03138...    28   5.2  
At1g22710.1 68414.m02838 sucrose transporter / sucrose-proton sy...    28   5.2  

>At5g08710.1 68418.m01035 regulator of chromosome condensation
           (RCC1) family protein / UVB-resistance protein-related
           contains Pfam PF00415 : Regulator of chromosome
           condensation (RCC1); similar to UVB-resistance protein
           UVR8  (GI:10177674) {Arabidopsis thaliana}
          Length = 434

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +2

Query: 350 WHPMRSSFAERFDITNIACGYGFTVASIKTSEQHKVFGTGINTDSQIG 493
           W P   S      IT +ACG   T+     +E  +VF TG+N   Q+G
Sbjct: 71  WTPAVCSALSDHSITAVACGGAHTLF---LTETRRVFATGLNDCGQLG 115


>At1g67720.1 68414.m07728 leucine-rich repeat family protein /
           protein kinase family protein contains similarity to
           light repressible receptor protein kinase [Arabidopsis
           thaliana] gi|1321686|emb|CAA66376; contains Pfam doamins
           PF00069: Protein kinase domain and PF00560: Leucine Rich
           Repeat
          Length = 929

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 285 WVSTSHVARKGKKVTKTTSNWFGIQ 359
           WVS S + ++GK VT   +NW  +Q
Sbjct: 46  WVSDSEIIKQGKPVTLANTNWNSMQ 70


>At5g60870.2 68418.m07635 regulator of chromosome condensation
           (RCC1) family protein weak similarity to UVB-resistance
           protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
           Pfam profile PF00415: Regulator of chromosome
           condensation (RCC1)
          Length = 383

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 20/53 (37%), Positives = 25/53 (47%)
 Frame = +2

Query: 350 WHPMRSSFAERFDITNIACGYGFTVASIKTSEQHKVFGTGINTDSQIGYHSPR 508
           W PM     E   IT IACG G+   S+  +E+ KV   G     Q+G  S R
Sbjct: 234 WEPMPVPSLEGVRITQIACG-GY--HSLALTEEGKVLSWGHGGHGQLGSSSLR 283


>At5g60870.1 68418.m07636 regulator of chromosome condensation
           (RCC1) family protein weak similarity to UVB-resistance
           protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
           Pfam profile PF00415: Regulator of chromosome
           condensation (RCC1)
          Length = 445

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 20/53 (37%), Positives = 25/53 (47%)
 Frame = +2

Query: 350 WHPMRSSFAERFDITNIACGYGFTVASIKTSEQHKVFGTGINTDSQIGYHSPR 508
           W PM     E   IT IACG G+   S+  +E+ KV   G     Q+G  S R
Sbjct: 303 WEPMPVPSLEGVRITQIACG-GY--HSLALTEEGKVLSWGHGGHGQLGSSSLR 352


>At1g63740.1 68414.m07213 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 992

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +2

Query: 440  SEQHKVFGTGINTDSQIGYHSPREIILWNFCLAMHLFI 553
            SEQ   +  G ++D ++ +H  + +  W FC   H F+
Sbjct: 950  SEQVSEYEDGYHSDRRLEFHEQKSLPGWGFCGIFHGFL 987


>At1g19880.1 68414.m02493 regulator of chromosome condensation
           (RCC1) family protein low similarity to UVB-resistance
           protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
           Pfam profile PF00415: Regulator of chromosome
           condensation (RCC1)
          Length = 538

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +2

Query: 386 DITNIACGYGFTVASIKTSEQHKVFGTGINTDSQIGYHSPRE 511
           ++TN+ACG  FTV  + ++E   +   G+    Q+G+ +  E
Sbjct: 168 EVTNVACGADFTV-WLSSTEGASILTAGLPQYGQLGHGTDNE 208


>At1g30930.1 68414.m03786 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 376

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
 Frame = -3

Query: 627 VGQDYCVSTSRCHCFNLTLQALVR-------YINRCIAKQKFQRMISRGEWYPIWESVLI 469
           V +    S +RCHC +   +A+ R       ++ R  A+ +   ++  GEW   W  + +
Sbjct: 14  VSRSTAKSVARCHCVSKQWRAIFRRKYFIELFLTRSKARPRILFVVQDGEWSE-WSFLSL 72

Query: 468 PVPK 457
           P P+
Sbjct: 73  PQPQ 76


>At3g07900.1 68416.m00965 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown; previously annotated as
           'auxin-independent growth promoter -related'  based on
           similarity to axi 1 protein (GB:X80301) (GI:559920) from
           [Nicotiana tabacum], which, due to scienitific fraud was
           retracted. Retraction in: Schell J. EMBO J 1999 May
           17;18(10):2908. PMID:10400497.
          Length = 579

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = +3

Query: 174 KKVHDPSEEELLPIFQYPISKSTDRRVMCGDLLRQVLWVSTSHVARKGKKVTK 332
           KK+  P++  +LP F       T+   M   L RQ L      +++ G+ VTK
Sbjct: 512 KKIITPNKRHMLPYFVNSSLTETEFEKMIKKLHRQSLGQPELRISKAGRDVTK 564


>At1g22710.1 68414.m02838 sucrose transporter / sucrose-proton
           symporter (SUC2) nearly identical to sucrose-proton
           symporter SUC2 [Arabidopsis thaliana] GI:407092
          Length = 512

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -3

Query: 615 YCVSTSRCHCFNLTLQALVRYINRCIAKQK 526
           YC +   C   ++TL  +V +++ C  K+K
Sbjct: 218 YCANLKTCFFLSITLLLIVTFVSLCYVKEK 247


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,247,716
Number of Sequences: 28952
Number of extensions: 313127
Number of successful extensions: 740
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)