Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30846.Seq
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|...    84   2e-17
SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy...    82   9e-17
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom...    71   2e-13
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    26   4.5  
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    25   7.9  

>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 250

 Score = 83.8 bits (198), Expect = 2e-17
 Identities = 43/85 (50%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
 Frame = +3

Query: 198 SHXEITGYAXEAFFCHQEEREIF-KRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEA 374
           S  +I   A E     Q++RE+  KRAE Y  EYR  ER++I LAR+AR  GNY+VP E 
Sbjct: 29  SREQIVAAAAEKKSARQKKRELIAKRAEAYEAEYRAAEREQIELARKARAEGNYFVPHEP 88

Query: 375 KLAFVIRIRGINQVSPKSVKFCNCL 449
           KL FV+RIRGIN + PK+ K    L
Sbjct: 89  KLIFVVRIRGINNIPPKARKIMQLL 113



 Score = 59.3 bits (137), Expect = 5e-10
 Identities = 41/94 (43%), Positives = 56/94 (59%), Gaps = 2/94 (2%)
 Frame = +2

Query: 422 EVRKVLQLFRLRQINNGVFVRLNKATVNM--YVSPSLTFAWGIPPTXKSVRELVLXNVGF 595
           + RK++QL RL QINNG+FV+ NKA   M   V P +T+  GI P  K+VREL+    GF
Sbjct: 105 KARKIMQLLRLLQINNGIFVKFNKAIKEMLQVVEPYVTY--GI-PNHKTVRELIYKR-GF 160

Query: 596 RQAELDQRITNHFPTALLRRRFHKHNIICVEDLI 697
            +    QRI      A++     K++I+ VEDLI
Sbjct: 161 GKVN-KQRIPLS-DNAIIEAALGKYSILSVEDLI 192


>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 251

 Score = 81.8 bits (193), Expect = 9e-17
 Identities = 42/77 (54%), Positives = 50/77 (64%), Gaps = 1/77 (1%)
 Frame = +3

Query: 222 AXEAFFCHQEEREIF-KRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRI 398
           A E     Q++RE+  KRAE Y  EYR  ER++I L R+AR  GNYYVP E KL FVIRI
Sbjct: 38  AAEKKAAQQKKRELIAKRAESYDAEYRKAEREQIELGRKARAEGNYYVPDETKLVFVIRI 97

Query: 399 RGINQVSPKSVKFCNCL 449
           RGIN + PK+ K    L
Sbjct: 98  RGINNIPPKARKIMQLL 114



 Score = 61.3 bits (142), Expect = 1e-10
 Identities = 43/94 (45%), Positives = 57/94 (60%), Gaps = 2/94 (2%)
 Frame = +2

Query: 422 EVRKVLQLFRLRQINNGVFVRLNKATVNM--YVSPSLTFAWGIPPTXKSVRELVLXNVGF 595
           + RK++QL RL QINNGVFV+ NKAT  M   V P +T+  GI P  K+VREL L   GF
Sbjct: 106 KARKIMQLLRLIQINNGVFVKFNKATKEMLQVVEPYVTY--GI-PNLKTVREL-LYKRGF 161

Query: 596 RQAELDQRITNHFPTALLRRRFHKHNIICVEDLI 697
            +    QRI      A++     K++I+ +EDLI
Sbjct: 162 GKVN-KQRIALS-DNAIIEAALGKYSILSIEDLI 193


>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 249

 Score = 70.9 bits (166), Expect = 2e-13
 Identities = 32/68 (47%), Positives = 44/68 (64%)
 Frame = +3

Query: 246 QEEREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPK 425
           +  +E FKRAE ++  YR +ER+ IRL R A+N+G+ +VP E KL FVIRI G+  + PK
Sbjct: 45  KNRKETFKRAETFINNYRQRERERIRLNRSAKNKGDIFVPDETKLLFVIRIAGVKNMPPK 104

Query: 426 SVKFCNCL 449
             K    L
Sbjct: 105 IRKVLRLL 112



 Score = 55.6 bits (128), Expect = 6e-09
 Identities = 38/92 (41%), Positives = 51/92 (55%)
 Frame = +2

Query: 422 EVRKVLQLFRLRQINNGVFVRLNKATVNMYVSPSLTFAWGIPPTXKSVRELVLXNVGFRQ 601
           ++RKVL+L RL +INN VFVR NKA   M         +GI P   SVREL+    GF +
Sbjct: 104 KIRKVLRLLRLSRINNAVFVRNNKAVAQMLRIVEPYVMYGI-PNLHSVRELIYKR-GFGK 161

Query: 602 AELDQRITNHFPTALLRRRFHKHNIICVEDLI 697
               QRI      AL+     K+++I +ED+I
Sbjct: 162 IN-GQRIALS-DNALIEEALGKYDVISIEDII 191


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
           Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = +3

Query: 270 RAEQYVKEYRIKERDEIRLARQARNRGNYYVPGE 371
           +A Q   ++ +     +RL     N+ N+++PGE
Sbjct: 309 KATQMTVDFLVDWAKSVRLCANRFNKSNFFIPGE 342


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1142

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -1

Query: 308  FLDAVFLDVLFSPLEDFPFFLMAEERLXSVTC 213
            FL +V+  +  S +ED+   L  E+++ SV C
Sbjct: 1092 FLQSVYSSLSESQVEDYQMELFREKQIFSVLC 1123


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,681,506
Number of Sequences: 5004
Number of extensions: 50659
Number of successful extensions: 135
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)