Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30846.Seq
         (698 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0835 + 8147177-8147359,8147871-8147968,8148045-8148102,814...    71   1e-12
04_04_1075 + 30634141-30634320,30634917-30635014,30635113-306351...    70   2e-12
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213...    42   4e-04
03_06_0238 - 32570222-32570330,32570538-32570599,32570658-325708...    30   1.5  
03_01_0270 - 2085461-2086205,2086260-2086339,2086598-2086690,208...    30   1.5  

>08_01_0835 +
           8147177-8147359,8147871-8147968,8148045-8148102,
           8148192-8148271,8148770-8148872,8148966-8149181
          Length = 245

 Score = 70.5 bits (165), Expect = 1e-12
 Identities = 32/68 (47%), Positives = 47/68 (69%)
 Frame = +3

Query: 246 QEEREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPK 425
           +  + IF RA+QY +EY  +E++ ++L R+AR +G +YV  EAKL FV+RIRGIN + PK
Sbjct: 42  ESRKLIFARAKQYAQEYDAQEKELVQLKREARMKGGFYVSPEAKLLFVVRIRGINAMHPK 101

Query: 426 SVKFCNCL 449
           + K    L
Sbjct: 102 TRKILQLL 109



 Score = 68.1 bits (159), Expect = 6e-12
 Identities = 41/92 (44%), Positives = 56/92 (60%)
 Frame = +2

Query: 422 EVRKVLQLFRLRQINNGVFVRLNKATVNMYVSPSLTFAWGIPPTXKSVRELVLXNVGFRQ 601
           + RK+LQL RLRQI NGVF+++NKAT+NM        A+G  P  KSVREL+    G+ +
Sbjct: 101 KTRKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVAYGY-PNLKSVRELIYKR-GYGK 158

Query: 602 AELDQRITNHFPTALLRRRFHKHNIICVEDLI 697
               QRI       ++     KH+IIC+EDL+
Sbjct: 159 LN-KQRIPLQ-NNKVIEEGLGKHDIICIEDLV 188


>04_04_1075 +
           30634141-30634320,30634917-30635014,30635113-30635170,
           30635259-30635338,30635686-30635788,30635847-30636080
          Length = 250

 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 31/68 (45%), Positives = 46/68 (67%)
 Frame = +3

Query: 246 QEEREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPK 425
           +  + IF RA+QY +EY  +E++ ++L R+AR +G +YV  E KL FV+RIRGIN + PK
Sbjct: 41  ESRKLIFSRAKQYAEEYEAQEKELVQLKREARMKGGFYVSPEEKLLFVVRIRGINAMHPK 100

Query: 426 SVKFCNCL 449
           + K    L
Sbjct: 101 TRKILQLL 108



 Score = 66.1 bits (154), Expect = 3e-11
 Identities = 44/97 (45%), Positives = 60/97 (61%), Gaps = 5/97 (5%)
 Frame = +2

Query: 422 EVRKVLQLFRLRQINNGVFVRLNKATVNMYVSPSLTFAWGIPPTXKSVRELVLXNVGFRQ 601
           + RK+LQL RLRQI NGVF+++NKAT+NM        A+G  P  KSVREL+    G+ +
Sbjct: 100 KTRKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVAYGY-PNLKSVRELIYKR-GYGK 157

Query: 602 AELDQRI--TNH---FPTALLRRRFHKHNIICVEDLI 697
               QRI  TN+     +  L +   KH+IIC+EDL+
Sbjct: 158 LN-KQRIPLTNNKVIEESWCLYQGLGKHDIICIEDLV 193


>08_02_1442 +
           27120604-27120890,27121029-27121166,27121280-27121382,
           27121877-27122036,27122927-27123114,27123203-27124770,
           27124882-27125869,27126595-27127098,27127347-27127433,
           27127753-27127821,27128012-27128041
          Length = 1373

 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 28/94 (29%), Positives = 51/94 (54%), Gaps = 3/94 (3%)
 Frame = +2

Query: 425 VRKVLQLFRLRQINNGVFVRLNKATVN--MYVSPSLTFAWGIPPTXKSVRELVL-XNVGF 595
           +R++L+  RL Q+  GVF++   AT+   + V P +T+ +   P  K+V++L+     GF
Sbjct: 104 MRRILRKLRLTQVLTGVFLKATDATMKRLLVVEPFITYGF---PNLKNVKDLIYKKGRGF 160

Query: 596 RQAELDQRITNHFPTALLRRRFHKHNIICVEDLI 697
              E     +N     L+ +   ++ IIC+EDL+
Sbjct: 161 LDKEPFPLTSND----LIEKALGEYGIICLEDLV 190


>03_06_0238 -
           32570222-32570330,32570538-32570599,32570658-32570883,
           32571165-32571532,32571644-32571743,32571817-32571879,
           32573077-32573123,32573222-32573353
          Length = 368

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 587 VGFRQAELDQRITNHFPTALLRRRFHKH 670
           VG   AEL++RI  H   A   RR H+H
Sbjct: 117 VGADDAELEERIIQHLAAAAAMRRSHRH 144


>03_01_0270 -
           2085461-2086205,2086260-2086339,2086598-2086690,
           2086774-2086881,2087012-2087101,2087234-2087275,
           2087516-2087587,2090848-2090985,2091074-2092624
          Length = 972

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = +3

Query: 189 RGSSHXEITGYAXEAFFCHQEEREIFKRAEQYVKEYRIKERDEIRLARQARNRG 350
           RG +H EIT    +A     ++R   +  ++ V   RIKER E R   +  +RG
Sbjct: 195 RGGNHGEITARDGDATIQESQKRPGKRWIDEPVGNDRIKERSERRTDGKRNSRG 248


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,372,405
Number of Sequences: 37544
Number of extensions: 325695
Number of successful extensions: 736
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)