Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30846.Seq
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)       93   1e-19
SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_50714| Best HMM Match : TPR_2 (HMM E-Value=2.9e-15)                 28   6.3  
SB_26369| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37)                    28   8.4  
SB_55889| Best HMM Match : REJ (HMM E-Value=5.4e-07)                   28   8.4  
SB_11021| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)
          Length = 245

 Score = 93.5 bits (222), Expect = 1e-19
 Identities = 44/69 (63%), Positives = 53/69 (76%)
 Frame = +3

Query: 243 HQEEREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSP 422
           H + +EIFKRAE+YVKEYR KE DE+R+ + A+  GN+YVP EA+LAFVIRIRGIN VSP
Sbjct: 41  HGKRKEIFKRAEKYVKEYRQKEVDELRMKKMAKKHGNFYVPPEARLAFVIRIRGINGVSP 100

Query: 423 KSVKFCNCL 449
           K  K    L
Sbjct: 101 KVRKILQLL 109



 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 47/94 (50%), Positives = 61/94 (64%), Gaps = 2/94 (2%)
 Frame = +2

Query: 422 EVRKVLQLFRLRQINNGVFVRLNKATVNM--YVSPSLTFAWGIPPTXKSVRELVLXNVGF 595
           +VRK+LQL RLRQINNGVFVRLNKAT NM   V P + F +   P  KSVREL+    G+
Sbjct: 101 KVRKILQLLRLRQINNGVFVRLNKATANMLRIVQPYIAFGY---PNLKSVRELIYKR-GY 156

Query: 596 RQAELDQRITNHFPTALLRRRFHKHNIICVEDLI 697
              ++D++       +++ +   KH IICVEDLI
Sbjct: 157 --GKVDKQRVALTDNSIVEKVLGKHGIICVEDLI 188


>SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1211

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +1

Query: 328 PDKHAIVATTTFPGKPNWHLSSESVVSTKFHRSP*SSATV*TAPNK 465
           PDK A+  TTT P   +   ++     T + R P  S T+ T P K
Sbjct: 363 PDKTAVPKTTTAPETTDASKTTVETQQTTYSRDPEISVTISTQPKK 408


>SB_50714| Best HMM Match : TPR_2 (HMM E-Value=2.9e-15)
          Length = 458

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 22/71 (30%), Positives = 35/71 (49%)
 Frame = +1

Query: 235 SSAIKKKGKSSRGLNSTSRNTASRNVMKSD*PDKHAIVATTTFPGKPNWHLSSESVVSTK 414
           ++A  K   ++ G + TSR+T       S    K A   T +   +P+W L+S + VS  
Sbjct: 156 TTASIKNVPTTNGPSKTSRSTDGEESAGSTHTKKPAKDDTDSSADEPDWDLTS-AFVSRA 214

Query: 415 FHRSP*SSATV 447
             R+P S+ TV
Sbjct: 215 AGRNPTSTTTV 225


>SB_26369| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 365

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -2

Query: 688 LNTDNVVFMEPSSQQCCWKVIGNTLVQLSL 599
           ++T N     P+SQ C W +  N+L++++L
Sbjct: 28  ISTPNYPQFYPTSQDCLWSIRVNSLLEITL 57


>SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37)
          Length = 712

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 303 KERDEIRLARQARNRGNYYVP 365
           K RD   +AR+ R+RG YY+P
Sbjct: 483 KIRDTSSIARETRSRGPYYLP 503


>SB_55889| Best HMM Match : REJ (HMM E-Value=5.4e-07)
          Length = 2008

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 543  IPQANVRLGDTYIFTVALFRRTNT 472
            +P    R+G TYIFTV   +R+ T
Sbjct: 1025 VPCEEFRVGTTYIFTVTAMKRSRT 1048


>SB_11021| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1033

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = -1

Query: 224 SVTCNLXVRRASLLLRCLSTDSG 156
           SVTCNL +    L  RC S DSG
Sbjct: 13  SVTCNLDITDGYLNARCNSQDSG 35


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,383,776
Number of Sequences: 59808
Number of extensions: 396330
Number of successful extensions: 854
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)