Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30846.Seq
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal pro...    77   9e-15
U41106-1|AAA82409.1|  347|Caenorhabditis elegans Hypothetical pr...    33   0.26 
Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical pr...    31   1.0  
AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein.      31   1.0  
AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP ...    31   1.0  
AF067940-8|AAC19200.1|  518|Caenorhabditis elegans Hypothetical ...    29   4.2  
Z68114-4|CAA92159.1|  324|Caenorhabditis elegans Hypothetical pr...    28   7.4  
Z81470-6|CAB03884.1|  104|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7 protein.
          Length = 244

 Score = 77.4 bits (182), Expect = 9e-15
 Identities = 33/63 (52%), Positives = 50/63 (79%)
 Frame = +3

Query: 246 QEEREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPK 425
           +++ + FKRAE+YV+EYR  +++ +RL R+A  +G++YVP E K+AFV+RIRGINQ+ PK
Sbjct: 41  EKKTQYFKRAEKYVQEYRNAQKEGLRLKREAEAKGDFYVPAEHKVAFVVRIRGINQLHPK 100

Query: 426 SVK 434
             K
Sbjct: 101 PRK 103



 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 38/89 (42%), Positives = 52/89 (58%)
 Frame = +2

Query: 428 RKVLQLFRLRQINNGVFVRLNKATVNMYVSPSLTFAWGIPPTXKSVRELVLXNVGFRQAE 607
           RK LQ+ RLRQINNGVFV+LNKAT+ +        AWG  P  K++ +L L   G+  A+
Sbjct: 102 RKALQILRLRQINNGVFVKLNKATLPLLRIIEPYVAWGY-PNNKTIHDL-LYKRGY--AK 157

Query: 608 LDQRITNHFPTALLRRRFHKHNIICVEDL 694
           +D          ++ +   K NIIC+EDL
Sbjct: 158 VDGNRVPITDNTIVEQSLGKFNIICLEDL 186


>U41106-1|AAA82409.1|  347|Caenorhabditis elegans Hypothetical
           protein W06A11.4 protein.
          Length = 347

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 22/71 (30%), Positives = 32/71 (45%)
 Frame = +1

Query: 247 KKKGKSSRGLNSTSRNTASRNVMKSD*PDKHAIVATTTFPGKPNWHLSSESVVSTKFHRS 426
           KK+ K SR     SR  ASR  +K     K    A +T P +PN +  S S  S ++  +
Sbjct: 21  KKRRKMSRKFTKKSRKRASRASIKLANEQKAKKYANSTVPMEPNVYTDSGSPFSNRYASN 80

Query: 427 P*SSATV*TAP 459
             S   + + P
Sbjct: 81  RSSQVKIRSVP 91


>Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical protein
            C05C12.3 protein.
          Length = 1694

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = +2

Query: 356  LRSRGSQIGICHPNPWYQPSFTEVRKVLQLFRLRQINNGVFVRLN--KATVNMYVSP 520
            L  R  Q+      PW  P FT +  V+ LF+L + ++ +F R N    ++ +++SP
Sbjct: 1346 LFERYGQVMEYESTPWLPPPFTIIYHVIWLFKLIKSSSRMFERKNLFDQSLKLFLSP 1402


>AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein.
          Length = 1694

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = +2

Query: 356  LRSRGSQIGICHPNPWYQPSFTEVRKVLQLFRLRQINNGVFVRLN--KATVNMYVSP 520
            L  R  Q+      PW  P FT +  V+ LF+L + ++ +F R N    ++ +++SP
Sbjct: 1346 LFERYGQVMEYESTPWLPPPFTIIYHVIWLFKLIKSSSRMFERKNLFDQSLKLFLSP 1402


>AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP
            homologous cationchannel protein.
          Length = 1681

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = +2

Query: 356  LRSRGSQIGICHPNPWYQPSFTEVRKVLQLFRLRQINNGVFVRLN--KATVNMYVSP 520
            L  R  Q+      PW  P FT +  V+ LF+L + ++ +F R N    ++ +++SP
Sbjct: 1333 LFERYGQVMEYESTPWLPPPFTIIYHVIWLFKLIKSSSRMFERKNLFDQSLKLFLSP 1389


>AF067940-8|AAC19200.1|  518|Caenorhabditis elegans Hypothetical
           protein F36F12.1 protein.
          Length = 518

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +2

Query: 347 WQLLRSRGSQIGICHPNPWYQPSFTEV-RKVLQLFRLRQINN 469
           +Q++R  G Q+GI    PW  P F++V R  L+  R  ++ N
Sbjct: 210 YQMVRELG-QLGIVTTQPWLTPKFSQVARPFLEPSRNSELRN 250


>Z68114-4|CAA92159.1|  324|Caenorhabditis elegans Hypothetical
           protein F17A2.6 protein.
          Length = 324

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = -2

Query: 544 YPPSKCKARRYVHIHSSLIQTYKHTIVYLAQSKQLQNFTDFGETW 410
           Y P + +  RY+ +++ + Q    +  YL Q +Q+ N     E W
Sbjct: 36  YTPKQLQTLRYILVNTCVFQVIHVSACYLMQFRQVSNLVPM-EVW 79


>Z81470-6|CAB03884.1|  104|Caenorhabditis elegans Hypothetical
           protein C14A6.7 protein.
          Length = 104

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 219 YAXEAFFCHQEEREIFKRAEQYVKEYRIKERDEIRLARQARN 344
           Y  EA   H++ RE+ K AE+Y  E  I   +  +  + +RN
Sbjct: 33  YTAEASGNHKKARELLKNAEKYEAEAEIIHEEIAQSWKASRN 74


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,919,060
Number of Sequences: 27780
Number of extensions: 284521
Number of successful extensions: 641
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)