Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30846.Seq
         (698 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          23   3.7  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          23   3.7  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          23   3.7  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          23   3.7  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          23   3.7  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          23   3.7  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          23   3.7  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    23   3.7  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   4.9  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   6.4  

>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/34 (23%), Positives = 22/34 (64%)
 Frame = +3

Query: 246 QEEREIFKRAEQYVKEYRIKERDEIRLARQARNR 347
           + ERE  +  ++ + EY ++   E +L++++++R
Sbjct: 47  EREREHERLKKKMILEYELRRAREKKLSKRSKSR 80


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/34 (23%), Positives = 22/34 (64%)
 Frame = +3

Query: 246 QEEREIFKRAEQYVKEYRIKERDEIRLARQARNR 347
           + ERE  +  ++ + EY ++   E +L++++++R
Sbjct: 47  EREREHERLKKKMILEYELRRAREKKLSKRSKSR 80


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/34 (23%), Positives = 22/34 (64%)
 Frame = +3

Query: 246 QEEREIFKRAEQYVKEYRIKERDEIRLARQARNR 347
           + ERE  +  ++ + EY ++   E +L++++++R
Sbjct: 47  EREREHERLKKKMILEYELRRAREKKLSKRSKSR 80


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/34 (23%), Positives = 22/34 (64%)
 Frame = +3

Query: 246 QEEREIFKRAEQYVKEYRIKERDEIRLARQARNR 347
           + ERE  +  ++ + EY ++   E +L++++++R
Sbjct: 47  EREREHERLKKKMILEYELRRAREKKLSKRSKSR 80


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/34 (23%), Positives = 22/34 (64%)
 Frame = +3

Query: 246 QEEREIFKRAEQYVKEYRIKERDEIRLARQARNR 347
           + ERE  +  ++ + EY ++   E +L++++++R
Sbjct: 47  EREREHERLKKKMILEYELRRAREKKLSKRSKSR 80


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/34 (23%), Positives = 22/34 (64%)
 Frame = +3

Query: 246 QEEREIFKRAEQYVKEYRIKERDEIRLARQARNR 347
           + ERE  +  ++ + EY ++   E +L++++++R
Sbjct: 47  EREREHERLKKKMILEYELRRAREKKLSKRSKSR 80


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/34 (23%), Positives = 22/34 (64%)
 Frame = +3

Query: 246 QEEREIFKRAEQYVKEYRIKERDEIRLARQARNR 347
           + ERE  +  ++ + EY ++   E +L++++++R
Sbjct: 47  EREREHERLKKKMILEYELRRAREKKLSKRSKSR 80


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/34 (23%), Positives = 22/34 (64%)
 Frame = +3

Query: 246 QEEREIFKRAEQYVKEYRIKERDEIRLARQARNR 347
           + ERE  +  ++ + EY ++   E +L++++++R
Sbjct: 47  EREREHERLKKKMILEYELRRAREKKLSKRSKSR 80


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 393 RIRGINQVSPKSVKFCNCLDC 455
           +  GI+  +P     C+CLDC
Sbjct: 312 KYEGISS-TPSQASSCSCLDC 331


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = +3

Query: 219 YAXEAFFCHQEEREIFKRAEQYVKEYRIKERDEIR 323
           YA + FF    +    +  E    EYR+ E D ++
Sbjct: 82  YAADIFFAQTWKDNRLRLPENMTSEYRLLEVDWLK 116


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,071
Number of Sequences: 438
Number of extensions: 3815
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)