Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30846.Seq
(698 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C) 77 1e-14
At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C) 77 1e-14
At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B) 76 2e-14
At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) simila... 76 3e-14
At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) simila... 76 3e-14
At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) simila... 76 3e-14
At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) simila... 47 1e-05
At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family... 29 3.0
At1g72470.1 68414.m08380 exocyst subunit EXO70 family protein co... 29 3.9
At5g06740.1 68418.m00762 lectin protein kinase family protein co... 27 9.0
At1g26540.1 68414.m03234 agenet domain-containing protein contai... 27 9.0
>At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C)
Length = 247
Score = 77.0 bits (181), Expect = 1e-14
Identities = 36/63 (57%), Positives = 45/63 (71%)
Frame = +3
Query: 261 IFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFC 440
IFKRAEQY KEY K+ + IRL R+A+ +G +YV EAKL F+IRIRGIN + PK+ K
Sbjct: 49 IFKRAEQYAKEYAEKDNELIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKIL 108
Query: 441 NCL 449
L
Sbjct: 109 QLL 111
Score = 68.9 bits (161), Expect = 3e-12
Identities = 43/94 (45%), Positives = 60/94 (63%), Gaps = 2/94 (2%)
Frame = +2
Query: 422 EVRKVLQLFRLRQINNGVFVRLNKATVNMY--VSPSLTFAWGIPPTXKSVRELVLXNVGF 595
+ +K+LQL RLRQI NGVF+++NKATVNM V P +T+ + P KSV+EL+ G+
Sbjct: 103 KTKKILQLLRLRQIFNGVFLKVNKATVNMLRRVEPYVTYGY---PNLKSVKELIYKR-GY 158
Query: 596 RQAELDQRITNHFPTALLRRRFHKHNIICVEDLI 697
+ QRI +++ + KH IICVEDLI
Sbjct: 159 GKLN-HQRIA-LTDNSIVDQALGKHGIICVEDLI 190
>At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C)
Length = 242
Score = 77.0 bits (181), Expect = 1e-14
Identities = 36/63 (57%), Positives = 45/63 (71%)
Frame = +3
Query: 261 IFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFC 440
IFKRAEQY KEY K+ + IRL R+A+ +G +YV EAKL F+IRIRGIN + PK+ K
Sbjct: 44 IFKRAEQYAKEYAEKDNELIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKIL 103
Query: 441 NCL 449
L
Sbjct: 104 QLL 106
Score = 68.9 bits (161), Expect = 3e-12
Identities = 43/94 (45%), Positives = 60/94 (63%), Gaps = 2/94 (2%)
Frame = +2
Query: 422 EVRKVLQLFRLRQINNGVFVRLNKATVNMY--VSPSLTFAWGIPPTXKSVRELVLXNVGF 595
+ +K+LQL RLRQI NGVF+++NKATVNM V P +T+ + P KSV+EL+ G+
Sbjct: 98 KTKKILQLLRLRQIFNGVFLKVNKATVNMLRRVEPYVTYGY---PNLKSVKELIYKR-GY 153
Query: 596 RQAELDQRITNHFPTALLRRRFHKHNIICVEDLI 697
+ QRI +++ + KH IICVEDLI
Sbjct: 154 GKLN-HQRIA-LTDNSIVDQALGKHGIICVEDLI 185
>At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B)
Length = 242
Score = 76.2 bits (179), Expect = 2e-14
Identities = 36/68 (52%), Positives = 47/68 (69%)
Frame = +3
Query: 246 QEEREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPK 425
+ + IFKRAEQY KEY KE++ I L R+A+ +G +YV EAKL F+IRIRGIN + PK
Sbjct: 39 ENRKLIFKRAEQYSKEYAEKEKELISLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPK 98
Query: 426 SVKFCNCL 449
+ K L
Sbjct: 99 TKKILQLL 106
Score = 66.5 bits (155), Expect = 2e-11
Identities = 41/94 (43%), Positives = 59/94 (62%), Gaps = 2/94 (2%)
Frame = +2
Query: 422 EVRKVLQLFRLRQINNGVFVRLNKATVNMY--VSPSLTFAWGIPPTXKSVRELVLXNVGF 595
+ +K+LQL RLRQI NGVF+++NKAT+NM V P +T+ + P KSV+EL+ G+
Sbjct: 98 KTKKILQLLRLRQIFNGVFLKVNKATMNMLRRVEPYVTYGF---PNLKSVKELIYKR-GY 153
Query: 596 RQAELDQRITNHFPTALLRRRFHKHNIICVEDLI 697
+ QRI +++ + KH IIC EDLI
Sbjct: 154 GKLN-HQRIA-LTDNSIVEQALGKHGIICTEDLI 185
>At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 75.8 bits (178), Expect = 3e-14
Identities = 35/68 (51%), Positives = 49/68 (72%)
Frame = +3
Query: 246 QEEREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPK 425
++ + IF RA+QY KEY+ KER+ I+L R+A+ +G +YV EAKL F+IRIRGIN + PK
Sbjct: 41 EKRKLIFNRAKQYSKEYQEKERELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPK 100
Query: 426 SVKFCNCL 449
+ K L
Sbjct: 101 TKKILQLL 108
Score = 71.3 bits (167), Expect = 6e-13
Identities = 42/94 (44%), Positives = 61/94 (64%), Gaps = 2/94 (2%)
Frame = +2
Query: 422 EVRKVLQLFRLRQINNGVFVRLNKATVNMY--VSPSLTFAWGIPPTXKSVRELVLXNVGF 595
+ +K+LQL RLRQI NGVF+++NKAT+NM V P +T+ + P KSV+EL+ GF
Sbjct: 100 KTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVTYGY---PNLKSVKELIYKR-GF 155
Query: 596 RQAELDQRITNHFPTALLRRRFHKHNIICVEDLI 697
+L+ + T +++ + KH IICVEDLI
Sbjct: 156 --GKLNHQRTALTDNSIVDQGLGKHGIICVEDLI 187
>At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 75.8 bits (178), Expect = 3e-14
Identities = 35/68 (51%), Positives = 49/68 (72%)
Frame = +3
Query: 246 QEEREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPK 425
++ + IF RA+QY KEY+ KER+ I+L R+A+ +G +YV EAKL F+IRIRGIN + PK
Sbjct: 41 EKRKLIFNRAKQYSKEYQEKERELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPK 100
Query: 426 SVKFCNCL 449
+ K L
Sbjct: 101 TKKILQLL 108
Score = 71.3 bits (167), Expect = 6e-13
Identities = 42/94 (44%), Positives = 61/94 (64%), Gaps = 2/94 (2%)
Frame = +2
Query: 422 EVRKVLQLFRLRQINNGVFVRLNKATVNMY--VSPSLTFAWGIPPTXKSVRELVLXNVGF 595
+ +K+LQL RLRQI NGVF+++NKAT+NM V P +T+ + P KSV+EL+ GF
Sbjct: 100 KTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVTYGY---PNLKSVKELIYKR-GF 155
Query: 596 RQAELDQRITNHFPTALLRRRFHKHNIICVEDLI 697
+L+ + T +++ + KH IICVEDLI
Sbjct: 156 --GKLNHQRTALTDNSIVDQGLGKHGIICVEDLI 187
>At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 75.8 bits (178), Expect = 3e-14
Identities = 35/68 (51%), Positives = 49/68 (72%)
Frame = +3
Query: 246 QEEREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPK 425
++ + IF RA+QY KEY+ KER+ I+L R+A+ +G +YV EAKL F+IRIRGIN + PK
Sbjct: 41 EKRKLIFNRAKQYSKEYQEKERELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPK 100
Query: 426 SVKFCNCL 449
+ K L
Sbjct: 101 TKKILQLL 108
Score = 71.3 bits (167), Expect = 6e-13
Identities = 42/94 (44%), Positives = 61/94 (64%), Gaps = 2/94 (2%)
Frame = +2
Query: 422 EVRKVLQLFRLRQINNGVFVRLNKATVNMY--VSPSLTFAWGIPPTXKSVRELVLXNVGF 595
+ +K+LQL RLRQI NGVF+++NKAT+NM V P +T+ + P KSV+EL+ GF
Sbjct: 100 KTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVTYGY---PNLKSVKELIYKR-GF 155
Query: 596 RQAELDQRITNHFPTALLRRRFHKHNIICVEDLI 697
+L+ + T +++ + KH IICVEDLI
Sbjct: 156 --GKLNHQRTALTDNSIVDQGLGKHGIICVEDLI 187
>At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) similar
to ribosomal protein L7 GB:AAA03081 GI:307388 from [Homo
sapiens]
Length = 247
Score = 47.2 bits (107), Expect = 1e-05
Identities = 23/61 (37%), Positives = 37/61 (60%)
Frame = +3
Query: 267 KRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNC 446
KR E +V E+R KE D IR+ ++ + + P ++ L F+IRI+G N + PK+ + N
Sbjct: 50 KRPEDFVHEFRAKEVDMIRMKQRVKRPKSSPPPVKSDLVFIIRIQGKNDMHPKTKRILNN 109
Query: 447 L 449
L
Sbjct: 110 L 110
>At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 1696
Score = 29.1 bits (62), Expect = 3.0
Identities = 20/52 (38%), Positives = 26/52 (50%)
Frame = +1
Query: 271 GLNSTSRNTASRNVMKSD*PDKHAIVATTTFPGKPNWHLSSESVVSTKFHRS 426
G + T R+ +R + SD K+ V+ T GK HLS E VS F RS
Sbjct: 407 GASVTPRSIKARRALLSD---KNEKVSVTERNGKLGTHLSDEISVSEGFRRS 455
>At1g72470.1 68414.m08380 exocyst subunit EXO70 family protein
contains Pfam domain PF03081: Exo70 exocyst complex
subunit;
Length = 633
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -2
Query: 517 RYVHIHSSLIQTYKHTIVYLAQSKQLQNFTD 425
RYV + SLI Y+ T++ L SK +N TD
Sbjct: 387 RYVMNYISLISEYRPTLIDLIMSKPSRNATD 417
>At5g06740.1 68418.m00762 lectin protein kinase family protein
contains Legume lectins beta-chain signature,
PROSITE:PS00307 and Serine/Threonine protein kinases
active-site signature, PROSITE:PS00108
Length = 652
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 377 IGICHPNPWYQPSFTEVRKVL 439
+ CHPNP +PS V KVL
Sbjct: 586 LACCHPNPNQRPSMKTVLKVL 606
>At1g26540.1 68414.m03234 agenet domain-containing protein contains
Pfam PF05641: Agenet domain
Length = 695
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -2
Query: 454 QSKQLQNFTDF-GETWLIPRIRMTNANLASPGT 359
+ KQL+ + G TW+ P I +N ++ SPGT
Sbjct: 126 ERKQLRTHLIWTGGTWIQPEIEESNKSMFSPGT 158
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,065,409
Number of Sequences: 28952
Number of extensions: 266044
Number of successful extensions: 698
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -