Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30844.Seq
(598 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0735 - 31579201-31579208,31579402-31579467,31580222-315803... 31 0.53
06_01_1202 + 10389090-10389140,10389218-10389853,10390355-103904... 31 0.92
08_01_0091 + 664913-664985,665281-665576,667197-667311,667901-66... 30 1.6
11_07_0008 + 27296049-27296395,27296681-27296963,27297575-27297595 29 2.8
09_02_0273 - 6577272-6577292,6577904-6578186,6578472-6578818 29 2.8
06_03_1344 - 29472139-29473292,29474478-29475386,29475504-294756... 29 2.8
07_01_0466 - 3518315-3521428 28 4.9
02_01_0704 - 5254458-5254760,5255091-5255182,5255285-5255501,525... 28 6.5
01_06_1440 + 37378121-37378958,37379344-37379494,37379567-373799... 27 8.6
>01_06_0735 -
31579201-31579208,31579402-31579467,31580222-31580307,
31580396-31580430,31580586-31580669,31580754-31580843,
31581267-31581304,31582042-31582108
Length = 157
Score = 31.5 bits (68), Expect = 0.53
Identities = 12/49 (24%), Positives = 29/49 (59%)
Frame = +3
Query: 231 QKEDQRSRKENKGKPEPKPAKGVTVPTRKGIKETQNVKSQDITKWRTTE 377
+ E++ S E++GK + K +G+ + + +N+K++++ +TTE
Sbjct: 51 ESEEEESEDESEGKAKHKGTEGLIQIENPNLVKAKNIKAKEVDLGKTTE 99
>06_01_1202 +
10389090-10389140,10389218-10389853,10390355-10390439,
10390536-10390654,10391251-10391318,10391401-10391710
Length = 422
Score = 30.7 bits (66), Expect = 0.92
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = +3
Query: 219 GEGAQKEDQRSRKENKGKPEPKPAKGVTVPTRKGIKETQNVKSQDITKWRT 371
G+G K+D++ K+ K K +P P T P K + N QD RT
Sbjct: 355 GKGKGKKDEKEDKDKKIKRKPSPTVQATTPPAK--RRKNNEVPQDSPAMRT 403
>08_01_0091 +
664913-664985,665281-665576,667197-667311,667901-667971
Length = 184
Score = 29.9 bits (64), Expect = 1.6
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Frame = +3
Query: 111 QEDHNGEFLRCGSSEQIRSFLGR*DRSS*CVKSA--RAGEGAQKEDQRSRKENKGKPEPK 284
Q+ G FL G E+ RS + + SA R GE A+ +D+ +R +GK
Sbjct: 20 QKAEKGNFLEVGEEERSRSEARMGRKRKELLSSAPWRTGEAAEDDDEAARLSREGKVSVT 79
Query: 285 PAKGVTVPT 311
G T PT
Sbjct: 80 SNPGET-PT 87
>11_07_0008 + 27296049-27296395,27296681-27296963,27297575-27297595
Length = 216
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 219 GEGAQKEDQRSRKENKGKPEPKPAKGVTVPTRKGIKETQ 335
G+G K+D++ K+ K K +P P T P K K +
Sbjct: 148 GKGKGKKDEKEDKDKKIKRKPSPIVQATTPPAKRRKNNE 186
>09_02_0273 - 6577272-6577292,6577904-6578186,6578472-6578818
Length = 216
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 219 GEGAQKEDQRSRKENKGKPEPKPAKGVTVPTRKGIKETQ 335
G+G K+D++ K+ K K +P P T P K K +
Sbjct: 148 GKGKGKKDEKEDKDKKIKRKPSPIVQATTPPAKRRKNNE 186
>06_03_1344 -
29472139-29473292,29474478-29475386,29475504-29475618,
29476017-29476218,29477177-29477296,29477431-29477582,
29478177-29478461
Length = 978
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +3
Query: 231 QKEDQRSRKENKGKPEPKPAKGVTVPTRKGIKETQNVKSQDITK 362
QK + R +K N + E V + TRK K K +D+T+
Sbjct: 398 QKREHRKKKRNITESESSSDSEVDIDTRKHPKREHRKKKRDVTE 441
>07_01_0466 - 3518315-3521428
Length = 1037
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = -2
Query: 537 ALVEVRPDDRKLASRWSAELLP 472
A +E R DDRK+AS+W +LLP
Sbjct: 540 ATIERRVDDRKVASKW-IDLLP 560
>02_01_0704 -
5254458-5254760,5255091-5255182,5255285-5255501,
5255972-5256068,5256175-5256415,5257100-5257180,
5257236-5257383
Length = 392
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = -2
Query: 597 WSWWNRDALHRAWFVVVKIAALVEVRPDDRKLASRWSAELLP 472
W +W L A F V+ + EV PD +L + E +P
Sbjct: 291 WKFWASTNLQLALFFVIHFQLMQEVVPDGEELMPHRNPENIP 332
>01_06_1440 +
37378121-37378958,37379344-37379494,37379567-37379936,
37380021-37380431,37380522-37380820,37380897-37381155,
37381248-37381497,37381744-37381875,37381936-37382208,
37383023-37383267
Length = 1075
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Frame = -2
Query: 591 WWNRDALHRAWFV---VVKIAALVEVRPDDRKLASRWSAE 481
W D H W ++ + LVE DDR A RW A+
Sbjct: 320 WLRVDPRHVPWLRAAGLLPLCRLVEAAADDRDPAKRWDAD 359
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,916,198
Number of Sequences: 37544
Number of extensions: 243330
Number of successful extensions: 697
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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