Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30844.Seq
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5808| Best HMM Match : No HMM Matches (HMM E-Value=.)               34   0.076
SB_52294| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.71 
SB_49207| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.93 
SB_3663| Best HMM Match : MBT (HMM E-Value=0)                          30   1.6  
SB_18984| Best HMM Match : DNA_topoisoIV (HMM E-Value=0)               29   2.2  
SB_44267| Best HMM Match : DUF602 (HMM E-Value=1.1e-29)                29   3.8  
SB_43866| Best HMM Match : Gelsolin (HMM E-Value=0.092)                28   5.0  
SB_54200| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_20579| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.39)           28   6.6  
SB_19759| Best HMM Match : HATPase_c (HMM E-Value=1.1e-13)             27   8.7  
SB_59693| Best HMM Match : Phage_integr_N (HMM E-Value=2.3)            27   8.7  
SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)                   27   8.7  
SB_18710| Best HMM Match : Glycophorin_A (HMM E-Value=0.42)            27   8.7  

>SB_5808| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 473

 Score = 34.3 bits (75), Expect = 0.076
 Identities = 15/45 (33%), Positives = 27/45 (60%)
 Frame = +3

Query: 216 AGEGAQKEDQRSRKENKGKPEPKPAKGVTVPTRKGIKETQNVKSQ 350
           A    +KE ++ RK+++GKP+P+  K    PTRK +K  + +  +
Sbjct: 293 ATSNEKKEQEKERKKSEGKPKPRSEK-EKQPTRKRVKRPEKLNKR 336


>SB_52294| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 394

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 136 YGVGVVNRYALFLDDETDPLDALKAREQ 219
           Y +GV NR+ L L DE DP    K  E+
Sbjct: 6   YSIGVNNRFGLLLSDEEDPETTFKESEK 33


>SB_49207| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 248

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 219 GEGAQKEDQRSRKENKGKPEPKPAKGVTVPTRKG 320
           G+ +QK+++  RK N+GKP P  +K + +    G
Sbjct: 46  GKTSQKDEKPERKSNRGKPGPNDSKYIRLAKAGG 79


>SB_3663| Best HMM Match : MBT (HMM E-Value=0)
          Length = 327

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +3

Query: 207 SARAGEGAQKEDQRSRKENKGKPEPKPAKGVTVPT 311
           SA + +  ++E++   KE + KP+P+P     +PT
Sbjct: 158 SAASSDDEEEEEEEEEKEKEEKPKPEPELAPPLPT 192


>SB_18984| Best HMM Match : DNA_topoisoIV (HMM E-Value=0)
          Length = 1182

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +3

Query: 240  DQRSRKENKGKPEPKPAKGVTVPTRKGIKETQNVKSQDITKWRTTE 377
            D+    + K  P  +PAKGVT  +R G  ++ +   + ++K +TT+
Sbjct: 1134 DEAQPGKKKAAPRKRPAKGVTAASRDGDSDS-DASVEVVSKKKTTK 1178


>SB_44267| Best HMM Match : DUF602 (HMM E-Value=1.1e-29)
          Length = 482

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
 Frame = +3

Query: 210 ARAGEGAQKEDQRSRKENKG-----KPEPKPAKGVTVPTRKGIKETQNVKSQDITKWRTT 374
           A+  EG  K+D+   K+++G     +P+PK ++G         K+++    +D  K + +
Sbjct: 221 AKKSEGPMKKDEPKAKKSEGPIKKDEPKPKKSEGPIKKDEPKAKKSEGPMKKDEPKPKKS 280

Query: 375 EG 380
           EG
Sbjct: 281 EG 282



 Score = 27.9 bits (59), Expect = 6.6
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
 Frame = +3

Query: 210 ARAGEGAQKEDQRSRKENKG---KPEPKPAKGVTVPTRKG---IKETQNVKSQDITKWRT 371
           A+  EG  K+D+   K++KG   K EPK AK    P +K     K+++    +D  K + 
Sbjct: 179 AKKSEGPMKKDEPKPKKSKGPIKKDEPK-AKKSEGPMKKDEPKAKKSEGPMKKDEPKAKK 237

Query: 372 TEG 380
           +EG
Sbjct: 238 SEG 240


>SB_43866| Best HMM Match : Gelsolin (HMM E-Value=0.092)
          Length = 341

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 222 EGAQKEDQRSRKENKGKPEPKPAKGVTVPTRKGIKETQNVKSQD 353
           E  QKE+ +  +  K + +PK AK  T  + K I+E +    QD
Sbjct: 117 EEVQKEEDKDGEVEKSEEKPKEAKAETEESGK-IEEVETTTEQD 159


>SB_54200| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 996

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +3

Query: 222 EGAQKEDQRSRKENKGKPEPKPAKG 296
           EG  KED    KE KGK E    +G
Sbjct: 875 EGKNKEDNEKEKEKKGKDEKDEKEG 899


>SB_20579| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.39)
          Length = 721

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +3

Query: 201 VKSARAGEGAQKEDQRSRKENKGKPEPKP 287
           + SA   + A++E+  +R+EN   P+P+P
Sbjct: 672 LSSAEPSKAAEQEETSTREENSVDPQPEP 700


>SB_19759| Best HMM Match : HATPase_c (HMM E-Value=1.1e-13)
          Length = 295

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/18 (66%), Positives = 12/18 (66%)
 Frame = -1

Query: 319 PFRVGTVTPLAGLGSGLP 266
           P   GTV PLAG G GLP
Sbjct: 180 PSTSGTVAPLAGYGYGLP 197


>SB_59693| Best HMM Match : Phage_integr_N (HMM E-Value=2.3)
          Length = 319

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 225 GAQKEDQRSRKENKGKPEPKPAKGVTVPTRKG 320
           G Q++   S +  +G+ EP+PA+ VT  T +G
Sbjct: 258 GNQQQIVDSSRATRGETEPRPAQTVTENTTRG 289


>SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1913

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +3

Query: 201  VKSARAGEGAQKEDQRSRKENKGKPE-PKPAKGVTVPTRKG 320
            +K+  AGEG Q++D RS  E    P  P+P  G    T  G
Sbjct: 1041 IKACDAGEG-QRKDSRSGAEGAAPPPLPRPYTGAGPKTPNG 1080


>SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)
          Length = 2049

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +3

Query: 204 KSARAGEGAQKEDQRSRKENKGKPEPKPAKGVTVPTRKGIKETQNVKSQ 350
           KSA  GEG +   ++ +K N G    K  K +T   +  + E +  K +
Sbjct: 492 KSATGGEGKEAPAKKKQKHNDGDAPKKSKKKLTHEEKLKLAEEEKEKKK 540


>SB_18710| Best HMM Match : Glycophorin_A (HMM E-Value=0.42)
          Length = 1451

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
 Frame = +3

Query: 231  QKEDQRSRKENKGKPEPKPAKGVTVPTRKGIKETQ----NVKSQDITKWRTTE 377
            +K+ Q S   N GKP  + A G ++ + +   + Q    + K++D+ + +TTE
Sbjct: 931  KKQIQHSESANNGKPNREQASGASLNSVQSEDQHQYSSLSTKNRDLQRAQTTE 983


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,455,740
Number of Sequences: 59808
Number of extensions: 263965
Number of successful extensions: 759
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)