Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30844.Seq
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote...    31   0.47 
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote...    31   0.47 
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote...    31   0.47 
CU457741-8|CAM36349.1|  544|Caenorhabditis elegans Hypothetical ...    29   2.5  
Z70684-8|CAA94603.2|  360|Caenorhabditis elegans Hypothetical pr...    28   5.8  

>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
            protein.
          Length = 10578

 Score = 31.5 bits (68), Expect = 0.47
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +3

Query: 249  SRKENKGKPEPKPAKGVTVPTRKGIKETQNVKSQDITKWRTTE 377
            ++KE +GKPE K  K  T      I ET    ++D+T+ + +E
Sbjct: 9171 TKKEIQGKPEKKIMKKKTEKADSSISETSETLTKDLTQTKQSE 9213


>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
            protein.
          Length = 18519

 Score = 31.5 bits (68), Expect = 0.47
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +3

Query: 249  SRKENKGKPEPKPAKGVTVPTRKGIKETQNVKSQDITKWRTTE 377
            ++KE +GKPE K  K  T      I ET    ++D+T+ + +E
Sbjct: 9191 TKKEIQGKPEKKIMKKKTEKADSSISETSETLTKDLTQTKQSE 9233


>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
            protein.
          Length = 18534

 Score = 31.5 bits (68), Expect = 0.47
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +3

Query: 249  SRKENKGKPEPKPAKGVTVPTRKGIKETQNVKSQDITKWRTTE 377
            ++KE +GKPE K  K  T      I ET    ++D+T+ + +E
Sbjct: 9191 TKKEIQGKPEKKIMKKKTEKADSSISETSETLTKDLTQTKQSE 9233


>CU457741-8|CAM36349.1|  544|Caenorhabditis elegans Hypothetical
           protein C42C1.8 protein.
          Length = 544

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +3

Query: 240 DQRSRKENKGKPEPKPAKGVTVPTRKGIKETQNVKSQDITKWRTTE 377
           +++++  NK KP+PK  K     ++KG K     + +D TK   T+
Sbjct: 9   ERKNQNPNKSKPDPKEKKS----SKKGKKSKNTEEQEDKTKTEETQ 50


>Z70684-8|CAA94603.2|  360|Caenorhabditis elegans Hypothetical
           protein F28D1.8 protein.
          Length = 360

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 204 KSARAGEGAQKEDQRSRKENKGKPEPKPAKGVTVPTRK 317
           K + AG+G  K+  +  KE KG  + +  K  + PT+K
Sbjct: 321 KKSGAGKGKGKKKSKVSKEKKGGKKVQKKKPASKPTKK 358


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,238,461
Number of Sequences: 27780
Number of extensions: 191302
Number of successful extensions: 653
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)