Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30842.Seq
(698 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 119 3e-28
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 106 3e-24
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 70 3e-13
SPBC31F10.06c |sar1||ADP-ribosylation factor Sar1|Schizosaccharo... 58 9e-10
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 38 0.001
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit... 35 0.010
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 35 0.010
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 34 0.022
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 29 0.85
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 28 1.1
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy... 27 2.6
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 27 3.4
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ... 26 4.5
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9... 26 6.0
SPAC17G6.09 |sec62||ER protein translocation subcomplex subunit ... 25 7.9
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 25 7.9
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 119 bits (287), Expect = 3e-28
Identities = 54/88 (61%), Positives = 67/88 (76%)
Frame = +2
Query: 254 YKLQVGEVVTTIPTIGFNVEQVTYKNLKFQVWDLGGQTSIRPYWRCYYGNTDAIIYVVDS 433
YKL++GE+VTTIPTIGFNVE V Y+N+ F VWD+GGQ IRP WR Y+ NT II+VVDS
Sbjct: 35 YKLKLGEIVTTIPTIGFNVETVEYRNISFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDS 94
Query: 434 ADRDRIGISKDELVHMLREEELANAYSL 517
DR+RI + +EL ML E+EL +A L
Sbjct: 95 NDRERISEAHEELQRMLNEDELRDALLL 122
Score = 43.6 bits (98), Expect = 3e-05
Identities = 20/30 (66%), Positives = 23/30 (76%)
Frame = +3
Query: 177 FRGLLGAREMRILILGLDGAGKTTILINCK 266
F+ L G REMRIL++GLD AGKTTIL K
Sbjct: 9 FQSLFGKREMRILMVGLDAAGKTTILYKLK 38
Score = 26.2 bits (55), Expect = 4.5
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +1
Query: 496 ISERVLVVLANKQDMAGCLTVAEGTPRALGL 588
+ + +L+V ANKQD+ + AE T + LGL
Sbjct: 116 LRDALLLVFANKQDLPNAMNAAEITDK-LGL 145
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 106 bits (254), Expect = 3e-24
Identities = 46/88 (52%), Positives = 63/88 (71%)
Frame = +2
Query: 254 YKLQVGEVVTTIPTIGFNVEQVTYKNLKFQVWDLGGQTSIRPYWRCYYGNTDAIIYVVDS 433
YKL++ + V TIPT+GFNVE VTYKN+KF VWD+GGQ IRP WR Y+ T +I+VVDS
Sbjct: 39 YKLKLNQSVVTIPTVGFNVETVTYKNIKFNVWDVGGQDKIRPLWRHYFTGTKGLIFVVDS 98
Query: 434 ADRDRIGISKDELVHMLREEELANAYSL 517
AD +RI ++ EL ++ + E+ + L
Sbjct: 99 ADSNRISEARQELHRIISDREMRDCLLL 126
Score = 39.5 bits (88), Expect = 5e-04
Identities = 20/35 (57%), Positives = 22/35 (62%)
Frame = +3
Query: 162 GLFSYFRGLLGAREMRILILGLDGAGKTTILINCK 266
G F L +EMRIL+LGLD AGKTTIL K
Sbjct: 8 GFSKPFSRLFSNKEMRILMLGLDAAGKTTILYKLK 42
Score = 29.5 bits (63), Expect = 0.48
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +1
Query: 481 VKGRRISERVLVVLANKQDMAGCLTVAEGT 570
+ R + + +L+VLANKQD+ G L+ A+ T
Sbjct: 115 ISDREMRDCLLLVLANKQDLPGALSPAQIT 144
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 70.1 bits (164), Expect = 3e-13
Identities = 29/70 (41%), Positives = 48/70 (68%)
Frame = +2
Query: 290 PTIGFNVEQVTYKNLKFQVWDLGGQTSIRPYWRCYYGNTDAIIYVVDSADRDRIGISKDE 469
PT GF + + + L+F +WD+GGQ ++R +W+ Y+ +T+AII+VVDS D R+ ++
Sbjct: 46 PTFGFQIRTLEVEGLRFTIWDIGGQKTLRNFWKNYFESTEAIIWVVDSLDDLRLEECRNT 105
Query: 470 LVHMLREEEL 499
L +L EE+L
Sbjct: 106 LQELLVEEKL 115
Score = 35.9 bits (79), Expect = 0.006
Identities = 16/22 (72%), Positives = 19/22 (86%)
Frame = +3
Query: 189 LGAREMRILILGLDGAGKTTIL 254
L RE+R+L+LGLD AGKTTIL
Sbjct: 12 LKEREVRVLLLGLDNAGKTTIL 33
>SPBC31F10.06c |sar1||ADP-ribosylation factor
Sar1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 190
Score = 58.4 bits (135), Expect = 9e-10
Identities = 28/71 (39%), Positives = 41/71 (57%)
Frame = +2
Query: 290 PTIGFNVEQVTYKNLKFQVWDLGGQTSIRPYWRCYYGNTDAIIYVVDSADRDRIGISKDE 469
PT+ E++ N++F +DLGG R WR Y+ + I+Y+VD D +R+ SK E
Sbjct: 50 PTLHPTSEELAIGNVRFTTFDLGGHQQARRLWRDYFPEVNGIVYLVDCCDFERLSESKAE 109
Query: 470 LVHMLREEELA 502
L +L EELA
Sbjct: 110 LDALLAMEELA 120
Score = 28.7 bits (61), Expect = 0.85
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +3
Query: 198 REMRILILGLDGAGKTTILINCKSVR 275
+ ++L LGLD AGKTT+L K+ R
Sbjct: 19 KHAKMLFLGLDNAGKTTLLHMLKNDR 44
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 37.9 bits (84), Expect = 0.001
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Frame = +2
Query: 287 IPTIGFNVEQVTY----KNLKFQVWDLGGQTSIRPYWRCYYGNTDAIIYVVDSADRD 445
I TIG + + T+ K +K Q+WD GQ R YY II V D D+D
Sbjct: 38 ISTIGVDFKIRTFELEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQD 94
>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 354
Score = 35.1 bits (77), Expect = 0.010
Identities = 16/52 (30%), Positives = 30/52 (57%)
Frame = +2
Query: 293 TIGFNVEQVTYKNLKFQVWDLGGQTSIRPYWRCYYGNTDAIIYVVDSADRDR 448
T+G + T +L+ +++D+GGQ + R W + N ++II+ V D D+
Sbjct: 179 TLGISEISFTLDHLQIRMFDVGGQRTERRKWIYCFENVNSIIFCVSLNDYDK 230
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 35.1 bits (77), Expect = 0.010
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = +2
Query: 245 DNSYKLQVG-EVVTTIPTIGFNVEQVTYKNLKFQVWDLGGQTSIRPYWRCYYGNTDAIIY 421
D+ VG + + I ++G +Q K +K Q+WD GQ R R YY +
Sbjct: 35 DDQVSHTVGIDFASRIISVGMGNQQ---KRIKLQIWDTAGQEKFRSVARNYYRGAAGAVL 91
Query: 422 VVDSADRD 445
V D ++D
Sbjct: 92 VYDVTNKD 99
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 33.9 bits (74), Expect = 0.022
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = +2
Query: 278 VTTIPTIGFNVEQVTY--KNLKFQVWDLGGQTSIRPYWRCYYGNTDAIIYVVDSADR 442
+TTI I F + + K +K Q+WD GQ R YY I+ + D D+
Sbjct: 39 ITTIG-IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLLYDVTDK 94
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 28.7 bits (61), Expect = 0.85
Identities = 13/54 (24%), Positives = 24/54 (44%)
Frame = +2
Query: 329 NLKFQVWDLGGQTSIRPYWRCYYGNTDAIIYVVDSADRDRIGISKDELVHMLRE 490
++K ++WD GQ + YY N + I V D + +K + + R+
Sbjct: 63 SVKLEIWDTAGQERYKSLAPMYYRNANCAIVVYDITQAASLEKAKSWIKELQRQ 116
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 28.3 bits (60), Expect = 1.1
Identities = 12/35 (34%), Positives = 15/35 (42%)
Frame = +2
Query: 326 KNLKFQVWDLGGQTSIRPYWRCYYGNTDAIIYVVD 430
K +K Q+WD GQ R YY + V D
Sbjct: 57 KKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYD 91
>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1142
Score = 27.1 bits (57), Expect = 2.6
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = -2
Query: 463 FRYSYSIPVS*VYNIYYCICVAIVTSPIRPN 371
F ++Y++ S VYN + +C + T+P + N
Sbjct: 494 FDFTYNLSESEVYNTVFNLCDELYTTPCKKN 524
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 26.6 bits (56), Expect = 3.4
Identities = 13/59 (22%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = +2
Query: 296 IGFNVEQVTYKN--LKFQVWDLGGQTSIRPYWRCYYGNTDAIIYVVDSADRDRIGISKD 466
+ F + ++ +N + F +WDLGGQ + AI+++ D + + + K+
Sbjct: 45 VNFMEKTISIRNTEITFSIWDLGGQREFVNMLPMVCNDAVAILFMFDLSRKSTLNSIKE 103
>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 26.2 bits (55), Expect = 4.5
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = +3
Query: 192 GAREMRILILGLDGAGKTTIL 254
G ++++L+LG +GKTTI+
Sbjct: 71 GGNDIKVLLLGAGDSGKTTIM 91
>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
Srb9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1223
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -2
Query: 295 RRYSGHDLTDLQFIRIVVFPAPSNPSIKIRISLA 194
R S H+L+ + FIR + P P++ KI LA
Sbjct: 1107 RNNSSHELSLVAFIREMAMPVPNDEFKKISTILA 1140
>SPAC17G6.09 |sec62||ER protein translocation subcomplex subunit
Sec62 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 273
Score = 25.4 bits (53), Expect = 7.9
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -2
Query: 583 PGPWVYPRLLSDIRPC 536
PG W++P LL+D+ C
Sbjct: 195 PGIWLFPNLLADVGFC 210
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = -3
Query: 135 NLLLLIRNVYALRLHIKDF*NCFFVLIYTWSTLNILFNNKYCTF 4
N + +R+ + R HI C ++ WS + L NN Y F
Sbjct: 422 NKCIQLRDYFDYRKHI-----CIVTDLFGWSVFDFLKNNNYIPF 460
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,865,565
Number of Sequences: 5004
Number of extensions: 61292
Number of successful extensions: 188
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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