Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30841.Seq
         (424 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   6.5  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    20   8.6  
AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory recept...    20   8.6  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -2

Query: 90  LCSYIFCKSF 61
           LC Y FC++F
Sbjct: 296 LCIYYFCRAF 305


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 328 IQLLNLEHSHSQFQN*YNLPK 266
           + L + EHS SQ Q+   +PK
Sbjct: 468 LALTSTEHSLSQSQHIQKIPK 488


>AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory receptor
           candidate 25 protein.
          Length = 314

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 328 IQLLNLEHSHSQFQN*YNLPK 266
           + L + EHS SQ Q+   +PK
Sbjct: 293 LALTSTEHSLSQSQHIQKIPK 313


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,220
Number of Sequences: 336
Number of extensions: 1823
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  9384961
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)