Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30841.Seq
         (424 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF014939-5|AAB63928.2|  302|Caenorhabditis elegans Hypothetical ...    28   2.4  
Z82276-5|CAH60784.1|  261|Caenorhabditis elegans Hypothetical pr...    27   4.2  
Z70311-4|CAA94373.1|  541|Caenorhabditis elegans Hypothetical pr...    27   5.5  
AL034365-3|CAA22261.1|  563|Caenorhabditis elegans Hypothetical ...    27   5.5  
Z82272-6|CAB05222.1| 1431|Caenorhabditis elegans Hypothetical pr...    27   7.3  
L23110-1|AAA03544.1|  744|Caenorhabditis elegans BMP receptor pr...    27   7.3  
AL009246-4|CAA15838.2|  368|Caenorhabditis elegans Hypothetical ...    27   7.3  
AF047651-12|AAN63460.1|  592|Caenorhabditis elegans Abnormal dau...    27   7.3  
AF047651-11|AAO61443.1|  446|Caenorhabditis elegans Abnormal dau...    27   7.3  
AF047651-10|AAC02726.1|  744|Caenorhabditis elegans Abnormal dau...    27   7.3  
Z99283-5|CAE46680.1|  308|Caenorhabditis elegans Hypothetical pr...    26   9.7  
U41534-7|AAB47599.3| 1743|Caenorhabditis elegans Hypothetical pr...    26   9.7  
U00031-5|AAP68960.1|  534|Caenorhabditis elegans Hypothetical pr...    26   9.7  
AC006603-7|ABB51201.1|  576|Caenorhabditis elegans Hypothetical ...    26   9.7  

>AF014939-5|AAB63928.2|  302|Caenorhabditis elegans Hypothetical
           protein ZC132.6 protein.
          Length = 302

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
 Frame = +2

Query: 2   KTLYKKFQNCDNAILLAVKPKLLQKMYEHNGLKATRELYED--FIRTPPTQIELH-KIMI 172
           + L  K+ N ++ I  ++  KLL++  +++ ++A +ELYE+   I     Q+  H +  I
Sbjct: 144 EALKNKYTNSESTIN-SLNEKLLKEKSKNDSIQAQKELYENLVIIIDQLRQLGEHLEDRI 202

Query: 173 NIEKSQEKLNLKAIRKCYECAVHHHGTAT 259
             +   +K + K  RK YE  +   GT T
Sbjct: 203 FKDLLLKKFSEKIRRKVYEQKLKDQGTWT 231


>Z82276-5|CAH60784.1|  261|Caenorhabditis elegans Hypothetical
           protein K03D3.11 protein.
          Length = 261

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = -3

Query: 383 SLINSSTI-SFLSMPTALLYTTAEFGAFPFSISKLI*SAQISLL 255
           S +N   I +FL +  ALL+ TA  GAF F +  ++ S QISLL
Sbjct: 51  STLNLMAICNFLVIVAALLFLTAFRGAFDFLV--VLSSIQISLL 92


>Z70311-4|CAA94373.1|  541|Caenorhabditis elegans Hypothetical
           protein T25B9.5 protein.
          Length = 541

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 175 IDHYFMKFNLCWWCPNKIFIQFPS 104
           I HY + FN   WC  K++ +FP+
Sbjct: 114 IFHYQLDFNEDGWCCKKLYEKFPT 137


>AL034365-3|CAA22261.1|  563|Caenorhabditis elegans Hypothetical
           protein Y69E1A.3 protein.
          Length = 563

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 175 IDHYFMKFNLCWWCPNKIFIQFPS 104
           I HY + FN   WC  K++ +FP+
Sbjct: 137 IFHYQLDFNEDGWCCKKLYEKFPT 160


>Z82272-6|CAB05222.1| 1431|Caenorhabditis elegans Hypothetical
           protein F55G11.9 protein.
          Length = 1431

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
 Frame = +2

Query: 155 LHKIMINIEKSQEKLNLKAIRKCYECAVHHHGTA-TKKFGQIILILKLRMGMLQIQQLYI 331
           L K+  N EK+   L+L+AIR      + H+G   +  FG I  + K   G + I  +  
Sbjct: 452 LVKVYTNGEKAVNGLSLRAIRGQVSILLGHNGCGKSTTFGMITGMHKATEGRVIIGGIDA 511

Query: 332 EELWACSRKIL 364
               A +RK++
Sbjct: 512 NSHRAAARKMI 522


>L23110-1|AAA03544.1|  744|Caenorhabditis elegans BMP receptor
           protein.
          Length = 744

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 11/49 (22%), Positives = 27/49 (55%)
 Frame = +1

Query: 229 VCCASSRDCNKEIWADYINFEIENGNAPNSAVVYRRAVGMLKKDIVDEF 375
           +CC S+ +CN     + +N  ++  ++ NSA+++      +  + +D+F
Sbjct: 181 MCCCSTNNCNMPDLIEMVNPSLKK-DSDNSALLWASTPSNMDLESLDKF 228


>AL009246-4|CAA15838.2|  368|Caenorhabditis elegans Hypothetical
           protein C47F8.5 protein.
          Length = 368

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -1

Query: 220 FSNCFQI*LFLRFFDIDHYFMKFNLCW 140
           FSN FQI L+ R   I  +F+ F L W
Sbjct: 3   FSNLFQIFLWARVAVIASFFITFLLLW 29


>AF047651-12|AAN63460.1|  592|Caenorhabditis elegans Abnormal dauer
           formation protein4, isoform c protein.
          Length = 592

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 11/49 (22%), Positives = 27/49 (55%)
 Frame = +1

Query: 229 VCCASSRDCNKEIWADYINFEIENGNAPNSAVVYRRAVGMLKKDIVDEF 375
           +CC S+ +CN     + +N  ++  ++ NSA+++      +  + +D+F
Sbjct: 29  MCCCSTNNCNMPDLIEMVNPSLKK-DSDNSALLWASTPSNMDLESLDKF 76


>AF047651-11|AAO61443.1|  446|Caenorhabditis elegans Abnormal dauer
           formation protein4, isoform d protein.
          Length = 446

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 11/49 (22%), Positives = 27/49 (55%)
 Frame = +1

Query: 229 VCCASSRDCNKEIWADYINFEIENGNAPNSAVVYRRAVGMLKKDIVDEF 375
           +CC S+ +CN     + +N  ++  ++ NSA+++      +  + +D+F
Sbjct: 181 MCCCSTNNCNMPDLIEMVNPSLKK-DSDNSALLWASTPSNMDLESLDKF 228


>AF047651-10|AAC02726.1|  744|Caenorhabditis elegans Abnormal dauer
           formation protein4, isoform a protein.
          Length = 744

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 11/49 (22%), Positives = 27/49 (55%)
 Frame = +1

Query: 229 VCCASSRDCNKEIWADYINFEIENGNAPNSAVVYRRAVGMLKKDIVDEF 375
           +CC S+ +CN     + +N  ++  ++ NSA+++      +  + +D+F
Sbjct: 181 MCCCSTNNCNMPDLIEMVNPSLKK-DSDNSALLWASTPSNMDLESLDKF 228


>Z99283-5|CAE46680.1|  308|Caenorhabditis elegans Hypothetical
           protein Y70C5C.6b protein.
          Length = 308

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +2

Query: 185 SQEKLNLKAIRKCYECAV 238
           S EK  LK IRKCYE  +
Sbjct: 13  SLEKARLKMIRKCYEAGM 30


>U41534-7|AAB47599.3| 1743|Caenorhabditis elegans Hypothetical protein
            C16A3.3 protein.
          Length = 1743

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 262  EIWADYINFEIENGNAPNSAVVYRRA 339
            +IW  Y+N E+  G+A     V+ RA
Sbjct: 1526 KIWTAYLNMEVAYGDAATVQKVFERA 1551


>U00031-5|AAP68960.1|  534|Caenorhabditis elegans Hypothetical
           protein B0361.11 protein.
          Length = 534

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -2

Query: 126 KSSYNSLVAFRPLCSYIFCKSFGLT 52
           K+S N LV F   CS+ F + FGLT
Sbjct: 127 KASTNLLVDFDLSCSHWFFQEFGLT 151


>AC006603-7|ABB51201.1|  576|Caenorhabditis elegans Hypothetical
           protein B0524.7 protein.
          Length = 576

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 328 YRRAVGMLKKDIVDEFIRDQTLSKIK 405
           Y  A  + ++D++DEF R Q L  I+
Sbjct: 153 YEEAYSLRQQDVIDEFWRHQCLKNIE 178


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,008,425
Number of Sequences: 27780
Number of extensions: 170499
Number of successful extensions: 443
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 692685370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)