Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30841.Seq
         (424 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   4.3  
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              20   10.0 
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    20   10.0 
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    20   10.0 
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    20   10.0 
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    20   10.0 
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    20   10.0 

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 4.3
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 232 CCASSRDCNKEIWADYINFEIENGNAPNSAVVYRR 336
           C A+S     EIW D +  ++   NA   A +Y R
Sbjct: 23  CSAASGLRWFEIWRDSLPTKMRELNATACAALYER 57


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 6/9 (66%), Positives = 9/9 (100%)
 Frame = +3

Query: 99  KLLGNCMKI 125
           KLLGNC+++
Sbjct: 27  KLLGNCVRV 35


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -2

Query: 144 VGGVLIKSSYNSLVAFRPLCSYIF 73
           V G  +   +  +VA R LC Y++
Sbjct: 309 VSGGALNDCHAEVVARRCLCEYLY 332


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 9/36 (25%), Positives = 16/36 (44%)
 Frame = -1

Query: 139 WCPNKIFIQFPSSFQAIMFVHFL*KFWFNSKKNCIV 32
           W P+  FI        ++ VHF  + + N   N ++
Sbjct: 143 WLPDTYFIMHGDFKDPLIPVHFALRIYRNGTVNYLM 178


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 9/36 (25%), Positives = 16/36 (44%)
 Frame = -1

Query: 139 WCPNKIFIQFPSSFQAIMFVHFL*KFWFNSKKNCIV 32
           W P+  FI        ++ VHF  + + N   N ++
Sbjct: 143 WLPDTYFIMHGDFKDPLIPVHFALRIYRNGTVNYLM 178


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 9/36 (25%), Positives = 16/36 (44%)
 Frame = -1

Query: 139 WCPNKIFIQFPSSFQAIMFVHFL*KFWFNSKKNCIV 32
           W P+  FI        ++ VHF  + + N   N ++
Sbjct: 194 WLPDTYFIMHGDFKDPLIPVHFALRIYRNGTVNYLM 229


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 9/36 (25%), Positives = 16/36 (44%)
 Frame = -1

Query: 139 WCPNKIFIQFPSSFQAIMFVHFL*KFWFNSKKNCIV 32
           W P+  FI        ++ VHF  + + N   N ++
Sbjct: 143 WLPDTYFIMHGDFKDPLIPVHFALRIYRNGTVNYLM 178


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,434
Number of Sequences: 438
Number of extensions: 2250
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10873896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)