Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30841.Seq
         (424 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g13210.1 68416.m01653 crooked neck protein, putative / cell c...    30   0.74 
At3g51110.1 68416.m05597 crooked neck protein, putative / cell c...    29   1.3  
At3g11964.1 68416.m01479 S1 RNA-binding domain-containing protei...    28   2.3  
At1g58250.1 68414.m06624 SABRE, putative similar to SABRE (GI:71...    28   2.3  
At5g45990.1 68418.m05656 crooked neck protein, putative / cell c...    27   5.2  
At5g41770.1 68418.m05086 crooked neck protein, putative / cell c...    27   5.2  
At3g06530.1 68416.m00757 BAP28-related similar to Protein BAP28 ...    27   6.9  
At5g35730.1 68418.m04274 EXS family protein / ERD1/XPR1/SYG1 fam...    26   9.1  
At3g49490.1 68416.m05409 expressed protein                             26   9.1  

>At3g13210.1 68416.m01653 crooked neck protein, putative / cell
           cycle protein, putative similar to Swiss-Prot:P17886
           crooked neck protein [Drosophila melanogaster]
          Length = 657

 Score = 29.9 bits (64), Expect = 0.74
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +1

Query: 256 NKEIWADYINFEIENGNAPNSAVVYRRAVGMLKK 357
           N ++W  Y +FE++N +   +  V+ RAV +L +
Sbjct: 90  NTQVWVKYADFEMKNKSVNEARNVWDRAVSLLPR 123



 Score = 27.5 bits (58), Expect = 4.0
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +1

Query: 250 DCNKEIWADYINFEIENGNAPNSAVVYRRAVGMLK 354
           D  + +W  YI+FEI  G    +  +Y R +   K
Sbjct: 480 DMPELLWKTYIDFEISEGELERTRALYERLLDRTK 514


>At3g51110.1 68416.m05597 crooked neck protein, putative / cell
           cycle protein, putative similar to Swiss-Prot:P17886
           crooked neck protein [Drosophila melanogaster]
          Length = 413

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +1

Query: 277 YINFEIENGNAPNSAVVYRRAVGMLKKDIVDE 372
           Y  FE++N     + +VY RA+ ML KD+ +E
Sbjct: 212 YAKFEMKNSQVSLARIVYERAIEML-KDVEEE 242



 Score = 28.3 bits (60), Expect = 2.3
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +1

Query: 256 NKEIWADYINFEIENGNAPNSAVVYRRAVGMLKKDIVDEF 375
           N  +W  Y  FE+ N +  ++  V+ RAV +L +  VD+F
Sbjct: 105 NHTLWLKYAEFEMRNKSVNHARNVWDRAVKILPR--VDQF 142


>At3g11964.1 68416.m01479 S1 RNA-binding domain-containing protein
            similar to SP|Q05022 rRNA biogenesis protein RRP5
            {Saccharomyces cerevisiae}; contains Pfam profile
            PF00575: S1 RNA binding domain
          Length = 1838

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
 Frame = +1

Query: 265  IWADYINFEIENGNAPNSAV--VYRRA 339
            IW  Y N E E+GN P  +V  V+ RA
Sbjct: 1630 IWVAYFNLENEHGNPPEESVKKVFERA 1656


>At1g58250.1 68414.m06624 SABRE, putative similar to SABRE (GI:719291)
            [Arabidopsis thaliana]
          Length = 2603

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 16/56 (28%), Positives = 31/56 (55%)
 Frame = +2

Query: 146  QIELHKIMINIEKSQEKLNLKAIRKCYECAVHHHGTATKKFGQIILILKLRMGMLQ 313
            ++EL KI +  ++ + KL L  IRK   C+ +   T  ++ G++ +I   R  ++Q
Sbjct: 1997 EVELAKINLEEKERERKLLLDDIRKLSPCSDNMDDTHIEREGELWMISTRRSILVQ 2052


>At5g45990.1 68418.m05656 crooked neck protein, putative / cell
           cycle protein, putative similar to Swiss-Prot:P17886
           crooked neck protein [Drosophila melanogaster]
          Length = 673

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = +1

Query: 241 SSRDCNKEIWADYINFEIENGNAPNSAVVYRRAV 342
           S    N + W DY+  E   GN      +Y RA+
Sbjct: 322 SKNPLNYDSWFDYVRLEESVGNKDRIREIYERAI 355



 Score = 27.1 bits (57), Expect = 5.2
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +1

Query: 250 DCNKEIWADYINFEIENGNAPNSAVVYRRAVGMLK 354
           D  + +W  YI+FEI  G    +  +Y R +   K
Sbjct: 510 DMPELLWKTYIDFEISEGEFEKTRALYERLLDRTK 544



 Score = 26.6 bits (56), Expect = 6.9
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +1

Query: 256 NKEIWADYINFEIENGNAPNSAVVYRRAVGMLKK 357
           N  +W  Y  FE++N    N+  V+ R+V +L +
Sbjct: 111 NHTLWVKYAEFEMKNKFVNNARNVWDRSVTLLPR 144


>At5g41770.1 68418.m05086 crooked neck protein, putative / cell
           cycle protein, putative similar to Swiss-Prot:P17886
           crooked neck protein [Drosophila melanogaster]
          Length = 705

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +1

Query: 250 DCNKEIWADYINFEIENGNAPNSAVVYRRAVGMLK 354
           D  + +W  YI+FEI  G    +  +Y R +   K
Sbjct: 523 DMPELLWKAYIDFEISEGELERTRALYERLLDRTK 557



 Score = 26.2 bits (55), Expect = 9.1
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +1

Query: 256 NKEIWADYINFEIENGNAPNSAVVYRRAV 342
           N + W DY+  E   GN      +Y RA+
Sbjct: 340 NYDSWFDYVRLEESVGNKDRIREIYERAI 368


>At3g06530.1 68416.m00757 BAP28-related similar to Protein BAP28
            (Swiss-Prot:Q9H583) [Homo sapiens]
          Length = 1830

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +2

Query: 38   AILLAVKPKLLQKMYEHNGLKATRELYEDFIRTPPTQIELHKIMINIEKSQEK-LNLKAI 214
            A LL V   LLQ+  ++NG K    L  +  +   +    HK  I+ +K +   LNL  +
Sbjct: 1243 AYLLGVVTSLLQQQTDYNGTKKVLGLISERAKDTSSSKMKHKRKISNQKGRNSWLNLDEV 1302


>At5g35730.1 68418.m04274 EXS family protein / ERD1/XPR1/SYG1 family
           protein low similarity to xenotropic and polytropic
           murine leukemia virus receptor [Mus spretus] GI:6093318;
           contains Pfam profile PF03124: EXS family
          Length = 457

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = -1

Query: 193 FLRFFDIDHYFMKFNLCWWCPNKIFIQFPSSFQAIMFVH 77
           + + FD+DH  +     W C   + I  P+S  A ++++
Sbjct: 124 YSKVFDLDHNHLTHREMWKCSMWMTIIVPTSMTAYLYLY 162


>At3g49490.1 68416.m05409 expressed protein
          Length = 953

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = +2

Query: 77  MYEHNGLKATRELYEDFIRTPPTQIELHKIMINIEKSQEKLNLKAI 214
           M   +G  ++RE   DF+  PPT+    +  +N E +     L  +
Sbjct: 111 MLSPSGFYSSRESSSDFVSLPPTENFSERQRLNFEPTYSSATLAPV 156


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,183,415
Number of Sequences: 28952
Number of extensions: 147536
Number of successful extensions: 417
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 655255392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)