Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30840.Seq
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    25   9.4  
SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar...    25   9.4  

>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -1

Query: 285 LMHKHIFLGVILLMKPYP-LLTLNHFTVPDTFSAMTCFCLTVL 160
           +++   FLG  +L   Y  L+   HF + + F ++  FC T+L
Sbjct: 90  MLNASCFLGFCVLAHDYVNLINARHFMI-EHFLSLFAFCRTIL 131


>SPAC13F5.06c |sec10||exocyst complex subunit
           Sec10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 14/57 (24%), Positives = 26/57 (45%)
 Frame = -1

Query: 588 FLTPQSPCAPPLGWAGVHDVLILLCVDSFTASSATLTREILAVVATALVCSIR*AFY 418
           +L     C   +G+   + + I++     TASS   T  IL+   + + C++   FY
Sbjct: 572 YLVDIRECKKIMGYFSAYLMSIVIPFTGVTASSRRETVNILSSSISVIECAVNDVFY 628


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,217,815
Number of Sequences: 5004
Number of extensions: 35053
Number of successful extensions: 77
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)