Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30840.Seq
         (648 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    25   0.48 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   1.9  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    22   4.4  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   5.9  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   7.8  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 334 DGEAVEFAVVAGEKGFEAAGVTGPGGEPV 420
           DG+ V    VA E GF+  G   P   P+
Sbjct: 81  DGQQVSITYVADENGFQVQGSHIPTAPPI 109


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = +1

Query: 220 QRQEWIWFHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAV 348
           +R+EW++ H+     E    HQ        +K V S+   +A+
Sbjct: 726 RRKEWLYLHRARSESEFEMYHQQLQGVAKNKKNVGSMSRNKAL 768


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -1

Query: 636 KNCDGKKCA*DGTMPSFLTPQSPCA 562
           + C  KKC   G  P  + P+  CA
Sbjct: 37  QECRLKKCLTVGMRPECMVPEYQCA 61


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -1

Query: 636 KNCDGKKCA*DGTMPSFLTPQSPCA 562
           + C  KKC   G  P  + P+  CA
Sbjct: 240 QECRLKKCLTVGMRPECVVPEYQCA 264


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 495 SSATLTREILAVVATALVC 439
           S  T+TR + AVV T  +C
Sbjct: 254 SRKTITRMLSAVVITFFIC 272


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,968
Number of Sequences: 438
Number of extensions: 2464
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)