Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30840.Seq
(648 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g36020.1 68417.m05128 cold-shock DNA-binding family protein c... 42 3e-04
At4g38680.1 68417.m05477 cold-shock DNA-binding family protein c... 42 5e-04
At2g17870.1 68415.m02070 cold-shock DNA-binding family protein c... 39 0.002
At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /... 39 0.003
At2g33620.3 68415.m04122 DNA-binding family protein / AT-hook pr... 30 1.2
At2g33620.2 68415.m04121 DNA-binding family protein / AT-hook pr... 30 1.2
At2g33620.1 68415.m04120 DNA-binding family protein / AT-hook pr... 30 1.2
At3g45830.1 68416.m04960 expressed protein 29 2.0
At1g25540.1 68414.m03171 phytochrome and flowering time regulato... 28 4.7
At5g50800.1 68418.m06293 nodulin MtN3 family protein similar to ... 27 8.1
At5g45190.1 68418.m05547 cyclin family protein similar to cyclin... 27 8.1
At5g35770.1 68418.m04285 sterile apetala (SAP) identical to ster... 27 8.1
At4g19600.1 68417.m02880 cyclin family protein similar to cyclin... 27 8.1
At2g47920.1 68415.m05991 kinase interacting family protein simil... 27 8.1
At2g39650.1 68415.m04862 expressed protein contains Pfam profile... 27 8.1
>At4g36020.1 68417.m05128 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 299
Score = 42.3 bits (95), Expect = 3e-04
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKG-FEAAGVTGPGGEP 417
F DD ++FVHQ++I + RS+ G+AVEFA+ G G +A VT PGG
Sbjct: 26 FITPDDGSVELFVHQSSIVS----EGYRSLTVGDAVEFAITQGSDGKTKAVNVTAPGGGS 81
Query: 418 VK 423
+K
Sbjct: 82 LK 83
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 188 AEKVSGTVKWFNVKSGYGFI 247
A + +G V WFN GYGFI
Sbjct: 8 AARSTGKVNWFNASKGYGFI 27
>At4g38680.1 68417.m05477 cold-shock DNA-binding family protein
contains Pfam domains PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 203
Score = 41.5 bits (93), Expect = 5e-04
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Frame = +1
Query: 202 GHCEMVQRQEWIWFHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAV-VAGEKG 378
G + Q+ F DD +D+FVHQ++I + RS+ EAVEF V +
Sbjct: 13 GSVKWFDTQKGFGFITPDDGGDDLFVHQSSIR----SEGFRSLAAEEAVEFEVEIDNNNR 68
Query: 379 FEAAGVTGPGGEPVKGS 429
+A V+GP G PV+G+
Sbjct: 69 PKAIDVSGPDGAPVQGN 85
Score = 29.9 bits (64), Expect = 1.5
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +2
Query: 191 EKVSGTVKWFNVKSGYGFI 247
E+ G+VKWF+ + G+GFI
Sbjct: 9 ERRKGSVKWFDTQKGFGFI 27
>At2g17870.1 68415.m02070 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 301
Score = 39.1 bits (87), Expect = 0.002
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Frame = +1
Query: 196 SIGHCEMVQRQEWIWFHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEK 375
SIG + F DD E++FVHQ++I + RS+ GE+VE+ + G
Sbjct: 11 SIGKVSWFSDGKGYGFITPDDGGEELFVHQSSIVSD----GFRSLTLGESVEYEIALGSD 66
Query: 376 G-FEAAGVTGPGG 411
G +A VT PGG
Sbjct: 67 GKTKAIEVTAPGG 79
>At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /
glycine-rich protein (GRP2) identical to Glycine-rich
protein 2b (AtGRP2b) [Arabidopsis thaliana]
SWISS-PROT:Q38896; contains Pfam domains PF00313:
'Cold-shock' DNA-binding domain and PF00098: Zinc
knuckle
Length = 201
Score = 38.7 bits (86), Expect = 0.003
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Frame = +1
Query: 202 GHCEMVQRQEWIWFHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGF 381
G + Q+ F D +D+FVHQ++I + RS+ E+VEF V G
Sbjct: 17 GTVKWFDTQKGFGFITPSDGGDDLFVHQSSIR----SEGFRSLAAEESVEFDVEVDNSGR 72
Query: 382 -EAAGVTGPGGEPVKGS 429
+A V+GP G PV+G+
Sbjct: 73 PKAIEVSGPDGAPVQGN 89
Score = 30.3 bits (65), Expect = 1.2
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +2
Query: 191 EKVSGTVKWFNVKSGYGFI 247
++ GTVKWF+ + G+GFI
Sbjct: 13 DRRKGTVKWFDTQKGFGFI 31
>At2g33620.3 68415.m04122 DNA-binding family protein / AT-hook
protein 1 (AHP1) identical to AT-hook protein 1
[Arabidopsis thaliana] gi|2598227|emb|CAA10857
Length = 351
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/51 (39%), Positives = 25/51 (49%)
Frame = +1
Query: 325 SVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGYHRQYFP 477
S G+ + + GE G G+TG G EPVK KRRG R+Y P
Sbjct: 69 SAGENSVLNMNLPGGESG----GMTGTGSEPVK-------KRRGRPRKYGP 108
>At2g33620.2 68415.m04121 DNA-binding family protein / AT-hook
protein 1 (AHP1) identical to AT-hook protein 1
[Arabidopsis thaliana] gi|2598227|emb|CAA10857
Length = 351
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/51 (39%), Positives = 25/51 (49%)
Frame = +1
Query: 325 SVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGYHRQYFP 477
S G+ + + GE G G+TG G EPVK KRRG R+Y P
Sbjct: 69 SAGENSVLNMNLPGGESG----GMTGTGSEPVK-------KRRGRPRKYGP 108
>At2g33620.1 68415.m04120 DNA-binding family protein / AT-hook
protein 1 (AHP1) identical to AT-hook protein 1
[Arabidopsis thaliana] gi|2598227|emb|CAA10857
Length = 351
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/51 (39%), Positives = 25/51 (49%)
Frame = +1
Query: 325 SVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGYHRQYFP 477
S G+ + + GE G G+TG G EPVK KRRG R+Y P
Sbjct: 69 SAGENSVLNMNLPGGESG----GMTGTGSEPVK-------KRRGRPRKYGP 108
>At3g45830.1 68416.m04960 expressed protein
Length = 1298
Score = 29.5 bits (63), Expect = 2.0
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Frame = +1
Query: 220 QRQEWIWFHQQDDTK--EDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAG 393
+R+ W++ H+ + + ED T + ++A + EAV A + E+ E
Sbjct: 1161 ERKLWVYLHRDREQEDFEDDGTSSTKKWKRPKKEAAEQTEEQEAVTVAFLGNEEQTE--- 1217
Query: 394 VTGPGGEPVKGSPYAADKRRG 456
T G EP G P D +G
Sbjct: 1218 -TEMGSEPKTGEPTGLDGDQG 1237
>At1g25540.1 68414.m03171 phytochrome and flowering time regulatory
protein (PFT1) PMID: 12815435
Length = 836
Score = 28.3 bits (60), Expect = 4.7
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +2
Query: 218 FNVKSGYGFINRMTPRKMCLCIRLPS 295
F S +GF+ ++ +K+C I+LPS
Sbjct: 623 FRAMSQHGFLGQLQDKKLCAVIQLPS 648
>At5g50800.1 68418.m06293 nodulin MtN3 family protein similar to
MtN3 GI:1619602 (root nodule development) from [Medicago
truncatula]
Length = 294
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +2
Query: 293 SPVTTHVRLCARSATERRWSLPWL 364
+PV T VR+C + +TE SLP++
Sbjct: 26 APVPTFVRICKKKSTEGFQSLPYV 49
>At5g45190.1 68418.m05547 cyclin family protein similar to cyclin T1
[Equus caballus] GI:5052355; contains Pfam profile
PF00134: Cyclin, N-terminal domain
Length = 579
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -3
Query: 76 GERRWWQRW*NTPRPLLDV 20
GE+ WWQ + TPR L DV
Sbjct: 241 GEKVWWQEFDVTPRQLEDV 259
>At5g35770.1 68418.m04285 sterile apetala (SAP) identical to sterile
apetala (GI:9758652) [Arabidopsis thaliana].
Length = 446
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 211 EMVQRQEWIWFHQQDDTKEDVFVHQTAIARN 303
+++ RQ W H DT D F+++ ARN
Sbjct: 85 QLLSRQVWARTHLMHDTWRDEFIYRHRTARN 115
>At4g19600.1 68417.m02880 cyclin family protein similar to cyclin
T2a [Homo sapiens] GI:2981198; contains Pfam profile
PF00134: Cyclin, N-terminal domain
Length = 541
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -3
Query: 76 GERRWWQRW*NTPRPLLDV 20
GE+ WWQ + TPR L DV
Sbjct: 241 GEKVWWQEFDVTPRQLEDV 259
>At2g47920.1 68415.m05991 kinase interacting family protein similar
to kinase interacting protein 1 (GI:13936326) [Petunia
integrifolia]
Length = 225
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/46 (26%), Positives = 20/46 (43%)
Frame = +1
Query: 220 QRQEWIWFHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFA 357
++ W WF +K ++ T + KA+ + DG A FA
Sbjct: 6 EKSRWWWFESHKSSKHSQWLQSTLAEIDAKTKAMLKLLDGNADSFA 51
>At2g39650.1 68415.m04862 expressed protein contains Pfam profile
PF04720: Protein of unknown function (DUF506)
Length = 291
Score = 27.5 bits (58), Expect = 8.1
Identities = 20/58 (34%), Positives = 29/58 (50%)
Frame = -1
Query: 495 SSATLTREILAVVATALVCSIR*AFYWLTTGTSNTSCFKAFLPGNHGKLHRLSVADRA 322
S A E+L+VV T ++ + + +GT N SC + +L KL RLS D A
Sbjct: 73 SMAQHETEVLSVVRTLMLTIKEKDLHSVKSGTCNASCIRFYL----AKLLRLSGYDAA 126
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,352,324
Number of Sequences: 28952
Number of extensions: 210879
Number of successful extensions: 638
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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