Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30838.Seq
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1370 - 32990002-32990244,32990950-32991943,32992019-329922...    44   9e-05
05_01_0029 + 187769-188707,188971-189246,189978-190174,190263-19...    30   1.6  
10_08_0050 + 14469879-14470072,14470620-14471094                       28   6.5  
08_01_0333 + 2977397-2977648,2978416-2978784,2980108-2980169,298...    27   8.6  

>04_04_1370 -
           32990002-32990244,32990950-32991943,32992019-32992240,
           32993413-32993543
          Length = 529

 Score = 44.0 bits (99), Expect = 9e-05
 Identities = 20/36 (55%), Positives = 26/36 (72%)
 Frame = -3

Query: 509 VQMQADLXGIPXIRPXMMESXALGAAIVAGRAMRVW 402
           +Q+QADL G P +RP  +E+ ALGAA  AG A+ VW
Sbjct: 446 MQIQADLLGSPVVRPADIETTALGAAYAAGLAVGVW 481


>05_01_0029 + 187769-188707,188971-189246,189978-190174,190263-190404,
            190584-190862,190941-191013,191331-191379,192169-192433,
            192576-192631,192777-192845,193028-193139,193682-193771,
            193955-194125,194449-194506,194970-195128,195379-195401
          Length = 985

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +2

Query: 365  GMYRPVGWVLSWATHALRDLRQXPPPGL 448
            G   PVGW L + T  L D    PPP L
Sbjct: 926  GNNNPVGWPLRFLTPVLSDENSVPPPSL 953


>10_08_0050 + 14469879-14470072,14470620-14471094
          Length = 222

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -3

Query: 293 GWTDTXNEHVNAENQIXLLQFCRRD 219
           G+T T ++  N+ N   +L+FCRR+
Sbjct: 101 GFTSTSSDRSNSGNSSEMLRFCRRE 125


>08_01_0333 +
           2977397-2977648,2978416-2978784,2980108-2980169,
           2980271-2980418
          Length = 276

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = -3

Query: 524 AXLSXVQMQADLXGIPXIRPXMMESXALGAAIVAGRAMRVWPTTIPSPPADTFLPALT 351
           A  + + M A L G P   P M  +  +GAA+  G   ++W   + +PP      A T
Sbjct: 215 AIAAAIMMNA-LVGGPSTGPSMNPARTIGAAVATGEYRQMW-IYLVAPPLGAIAGAAT 270


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,880,383
Number of Sequences: 37544
Number of extensions: 258308
Number of successful extensions: 525
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 525
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)