Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30838.Seq
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44893| Best HMM Match : FGGY_C (HMM E-Value=2.5)                    39   0.003
SB_34143| Best HMM Match : FGGY_C (HMM E-Value=0.51)                   39   0.003
SB_17612| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.003
SB_27151| Best HMM Match : Thioredoxin (HMM E-Value=9.2e-32)           29   2.9  
SB_23698| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_34260| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_21449| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_41825| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  

>SB_44893| Best HMM Match : FGGY_C (HMM E-Value=2.5)
          Length = 85

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 20/38 (52%), Positives = 26/38 (68%), Gaps = 2/38 (5%)
 Frame = -3

Query: 509 VQMQADLXGIPXIRPXMMESXALGAAIVAGRA--MRVW 402
           +Q+QAD+ GI   RP M E+ ALGAA+ AG A  + VW
Sbjct: 25  MQLQADILGISVERPTMPETTALGAAMAAGAAKGIEVW 62


>SB_34143| Best HMM Match : FGGY_C (HMM E-Value=0.51)
          Length = 137

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 20/38 (52%), Positives = 26/38 (68%), Gaps = 2/38 (5%)
 Frame = -3

Query: 509 VQMQADLXGIPXIRPXMMESXALGAAIVAGRA--MRVW 402
           +Q+QAD+ GI   RP M E+ ALGAA+ AG A  + VW
Sbjct: 25  MQLQADILGISVERPTMPETTALGAAMAAGAAKGIEVW 62


>SB_17612| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 566

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 20/38 (52%), Positives = 26/38 (68%), Gaps = 2/38 (5%)
 Frame = -3

Query: 509 VQMQADLXGIPXIRPXMMESXALGAAIVAGRA--MRVW 402
           +Q+QAD+ GI   RP M E+ ALGAA+ AG A  + VW
Sbjct: 436 MQLQADILGISVERPTMPETTALGAAMAAGAAKGIEVW 473


>SB_27151| Best HMM Match : Thioredoxin (HMM E-Value=9.2e-32)
          Length = 456

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = -1

Query: 502 CRLIYXVYQXFVPS*WKVQPWGRXLSQVAQCVCGPRQYPAHRPIHSCRLLPMKNEKCGEF 323
           CR +   +Q  VP+  + Q WG  + +  +C    +Q    R  H  +LL  +  +CGE+
Sbjct: 290 CRQVAVYHQRGVPT-LEEQEWGVGVVEEYKCPTCSQQIRFPRYNHPAKLLETRCGRCGEW 348


>SB_23698| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 964

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
 Frame = +3

Query: 363 QECIGRW--AGYCRGPHTHCATC 425
           QEC+GRW  A + RG H  C  C
Sbjct: 26  QECLGRWNVAQFFRGRHPTCPHC 48


>SB_34260| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 249

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 258 CVDMFIXSIGPSHAFIQGFFPTNSPHFSFFIG 353
           CV   + S   SH+ +Q  F ++   +SFFIG
Sbjct: 16  CVRGLVPSFARSHSLVQNVFSSSIISWSFFIG 47


>SB_21449| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 389

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -3

Query: 509 VQMQADLXGIPXIRPXMMESXALGAAIVAGRAMRVW 402
           +++ + L G    RP   +   LGAA +AG A  VW
Sbjct: 21  MELTSSLTGQSMDRPSQTDMSVLGAAFLAGMATGVW 56


>SB_41825| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 825

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +3

Query: 351 GKSRQECIGRWAGYCRGPHTHCAT 422
           G + Q C G  AGYC  P  HC T
Sbjct: 751 GSAAQHC-GTNAGYCGIPSNHCGT 773


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,572,836
Number of Sequences: 59808
Number of extensions: 293523
Number of successful extensions: 437
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 436
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)