Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30838.Seq
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g80460.1 68414.m09423 glycerol kinase, putative similar to gl...    42   3e-04
At4g30310.3 68417.m04309 ribitol kinase, putative similar to rib...    32   0.25 
At4g30310.2 68417.m04308 ribitol kinase, putative similar to rib...    32   0.25 
At5g24480.1 68418.m02885 hypothetical protein similar to unknown...    29   2.4  
At1g27750.1 68414.m03391 ubiquitin system component Cue domain-c...    28   5.4  

>At1g80460.1 68414.m09423 glycerol kinase, putative similar to
           glycerol kinase (ATP:glycerol 3-phosphotransferase,
           Glycerokinase, GK)[Mycobacterium tuberculosis]
           Swiss-Prot:O69664
          Length = 522

 Score = 41.9 bits (94), Expect = 3e-04
 Identities = 19/36 (52%), Positives = 25/36 (69%)
 Frame = -3

Query: 509 VQMQADLXGIPXIRPXMMESXALGAAIVAGRAMRVW 402
           +Q+QADL G P +RP  +E+ ALGAA  AG A+  W
Sbjct: 438 MQIQADLMGSPVVRPVDIETTALGAAYAAGLAVGFW 473


>At4g30310.3 68417.m04309 ribitol kinase, putative similar to
           ribitol kinase [Klebsiella pneumoniae]
           gi|2905643|gb|AAC26495
          Length = 451

 Score = 32.3 bits (70), Expect = 0.25
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = -3

Query: 509 VQMQADLXGIPXIRPXMMESXALGAAIVAGRAMRVWPT 396
           +Q  AD+ G P I P   ES  LGAAI+   A + +P+
Sbjct: 361 IQEHADIVGCPIILPRESESVLLGAAILGAVAGKNYPS 398


>At4g30310.2 68417.m04308 ribitol kinase, putative similar to
           ribitol kinase [Klebsiella pneumoniae]
           gi|2905643|gb|AAC26495
          Length = 579

 Score = 32.3 bits (70), Expect = 0.25
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = -3

Query: 509 VQMQADLXGIPXIRPXMMESXALGAAIVAGRAMRVWPT 396
           +Q  AD+ G P I P   ES  LGAAI+   A + +P+
Sbjct: 489 IQEHADIVGCPIILPRESESVLLGAAILGAVAGKNYPS 526


>At5g24480.1 68418.m02885 hypothetical protein similar to unknown
           protein (gb|AAD32930.1)
          Length = 350

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
 Frame = -3

Query: 470 RPXMMESXALGAAIVAGRAMRVWPTTIPSP---PADTFL 363
           RP          ++ + R  R WP T+PSP    A TFL
Sbjct: 10  RPHFQSIHFFDCSLTSDRGQRSWPATLPSPQPLSASTFL 48


>At1g27750.1 68414.m03391 ubiquitin system component Cue
            domain-containing protein very low similarity to ASC-1
            complex subunit P100 [Homo sapiens] GI:12061187; contains
            Pfam profile PF02845: CUE domain
          Length = 1973

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
 Frame = -1

Query: 388  PAHRPIHSCRLLPMKNEKCGEFVGKKP*INAWDGPILK--MNMST---QKIR*XYCSFAA 224
            P   P+ S RL PM  + CG    K+   + W G + K  ++ ST   Q++    C +  
Sbjct: 899  PPFSPLLSPRLPPMVTQLCGSEASKQNIGHQWQGALSKSGVHYSTIIAQRLESDICKYII 958

Query: 223  GTFFPRNRP 197
            G+  P   P
Sbjct: 959  GSPEPVQWP 967


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,566,689
Number of Sequences: 28952
Number of extensions: 190238
Number of successful extensions: 293
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 293
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)