Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30837.Seq
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)          109   2e-24
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)             104   8e-23
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)                97   1e-20
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                 80   1e-15
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.29 
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                    32   0.39 
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)              30   1.6  
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)              30   2.1  
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)                     30   2.1  
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)              29   2.7  
SB_19066| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.8  
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)               28   6.3  

>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score =  109 bits (262), Expect = 2e-24
 Identities = 46/114 (40%), Positives = 76/114 (66%)
 Frame = +3

Query: 255 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 434
           T+++    F+T   + T++DAPGH+ F+ NMI+G +QAD  VL+++A  GEFE G  + G
Sbjct: 209 TVEVGRAAFDTDTKHFTLLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFERGG 268

Query: 435 QTREHALLAFTLGVKQLIVGSKQNGSTEPPYSEPRFEGIKKEVSSYIQKIXYKP 596
           QTREHA+LA T GVK L++   +       ++E R+E IK +++ +++K+ + P
Sbjct: 269 QTREHAMLAKTAGVKHLVILVNKMDDPTVKWNEERYEEIKVKLTPFLKKVGFNP 322



 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 17/40 (42%), Positives = 28/40 (70%)
 Frame = +1

Query: 127 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 246
           Y  G +DKRT+EK+E+EA+E  + ++  +W LD  + ER+
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERD 205


>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score =  104 bits (249), Expect = 8e-23
 Identities = 47/78 (60%), Positives = 60/78 (76%)
 Frame = +3

Query: 258 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 437
           +D+ L +F+T    +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG    GQ
Sbjct: 1   MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60

Query: 438 TREHALLAFTLGVKQLIV 491
           TREHA+L  +LGV QLIV
Sbjct: 61  TREHAILVRSLGVTQLIV 78


>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
          Length = 106

 Score = 97.1 bits (231), Expect = 1e-20
 Identities = 44/49 (89%), Positives = 46/49 (93%)
 Frame = +1

Query: 43  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 189
           M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 1   MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49


>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score = 80.2 bits (189), Expect = 1e-15
 Identities = 35/37 (94%), Positives = 36/37 (97%)
 Frame = +3

Query: 255 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 365
           TIDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 24  TIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60



 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 20/20 (100%), Positives = 20/20 (100%)
 Frame = +1

Query: 187 MGKGSFKYAWVLDKLKAERE 246
           MGKGSFKYAWVLDKLKAERE
Sbjct: 1   MGKGSFKYAWVLDKLKAERE 20


>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +3

Query: 300 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 404
           +T ID PGH  F      G +  D  VL+VAA  G
Sbjct: 78  ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDG 112


>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = +1

Query: 43  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 138
           M K+    N+ VI HVD GKST T  L+ K G
Sbjct: 12  MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAG 43



 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 294 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 404
           + + +ID+PGH DF   +       D A+++V   +G
Sbjct: 99  FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135


>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
          Length = 541

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 19/89 (21%), Positives = 38/89 (42%)
 Frame = +3

Query: 309 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 488
           +D PGH   +  M+ G +  D A+L++A              QT EH      + +K ++
Sbjct: 69  VDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMKLKHIL 122

Query: 489 VGSKQNGSTEPPYSEPRFEGIKKEVSSYI 575
           +   +    +   ++ +++ I K V   I
Sbjct: 123 ILQNKIDLVKESQAKDQYDQILKFVQGTI 151


>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
          Length = 783

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 306 IIDAPGHRDFIKNMITGTSQADCAVLIV 389
           IID PGH  F      G+S  D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709


>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 359

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = +3

Query: 300 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 404
           + I+D PGH+DF ++     +  D  ++++    G
Sbjct: 81  INILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115


>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +1

Query: 58  THINIVVIGHVDSGKSTTTGHLIY 129
           T I + V+G+V+SGKST  G L Y
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTY 134


>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
          Length = 203

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 3/96 (3%)
 Frame = +3

Query: 300 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTR---EHALLAFTL 470
           +T++D PGH   IK +I G      A +I   GT   E G  ++G+ +      LL  T 
Sbjct: 104 MTLVDCPGHASLIKTIIGG------AQIIGECGT--IEGGFGQSGKVKIRIPGGLLPDT- 154

Query: 471 GVKQLIVGSKQNGSTEPPYSEPRFEGIKKEVSSYIQ 578
             KQL   SK+ G       E   E +K  +   ++
Sbjct: 155 -AKQLAGASKKKGKGAQAVEEGE-ESVKGNIKVILE 188


>SB_19066| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 261

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -1

Query: 563 YFLLDSLKSGLTVWWFS-GTILFTPYDELFDTEGESEQG 450
           YFL++  K  L  WW S G  ++ P   L   EG+ E G
Sbjct: 55  YFLVNEHKRQLWRWWISAGQSVWLPVSRLTGKEGDPEIG 93


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 67   NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK 165
            N  ++ HVD GKST    L+   G I K +  K
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK 1975


>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
          Length = 240

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/47 (25%), Positives = 19/47 (40%)
 Frame = +3

Query: 255 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 395
           T  I  +  +     +  +D PGH  F      G    D  +++VAA
Sbjct: 125 TQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAA 171


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,443,696
Number of Sequences: 59808
Number of extensions: 481880
Number of successful extensions: 1132
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1131
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)