Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30836.Seq
         (439 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   1.3  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   1.3  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   5.1  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   5.1  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   5.1  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   5.1  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +2

Query: 212 MGTPDIRVDTRLNKSFGLRESEMFP 286
           MG P  ++D++   S GL    M+P
Sbjct: 142 MGIPPYQLDSKTAGSMGLTRPPMYP 166


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +2

Query: 212 MGTPDIRVDTRLNKSFGLRESEMFP 286
           MG P  ++D++   S GL    M+P
Sbjct: 34  MGIPPYQLDSKTAGSMGLTRPPMYP 58


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = -3

Query: 92  WLICLFFHLWV 60
           W+ CL F  WV
Sbjct: 131 WMWCLIFAFWV 141


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = -3

Query: 92  WLICLFFHLWV 60
           W+ CL F  WV
Sbjct: 131 WMWCLIFAFWV 141


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = -3

Query: 92  WLICLFFHLWV 60
           W+ CL F  WV
Sbjct: 131 WMWCLIFAFWV 141


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = -3

Query: 92  WLICLFFHLWV 60
           W+ CL F  WV
Sbjct: 131 WMWCLIFAFWV 141


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,945
Number of Sequences: 336
Number of extensions: 1785
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9775509
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)