Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30834.Seq
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.08 |psk1||serine/threonine protein kinase Psk1|Schizosac...    30   0.37 
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|...    28   1.1  
SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces p...    26   4.5  
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    26   4.5  
SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p...    26   4.5  
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni...    26   6.0  
SPCC1442.05c |||conserved fungal protein|Schizosaccharomyces pom...    26   6.0  

>SPCC4G3.08 |psk1||serine/threonine protein kinase
           Psk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 436

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = +2

Query: 11  IVFYIILVVQARTLIP*INMADQNQQAGDTGPPKGIPALKAHIIANKID 157
           I FY+     AR +I      +  Q+ G  GP KG  A+K H I  +ID
Sbjct: 308 IPFYV--TSDARDIINKFLKKNPKQRLGADGPEKGYDAIKKHRIYRRID 354


>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
           Alp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 21/54 (38%), Positives = 27/54 (50%)
 Frame = +3

Query: 312 DLPLAGFHGEVLPGGQRSLFILFTHFHERRAQFVNIGANLFICAATRRFVFLDY 473
           DL +     E+L  G   L I  T F E R+ F     N  +CAA R+FV +DY
Sbjct: 114 DLGIKDIASEMLEMGSHYLSI--TAFIESRSHFEYGFVNHALCAALRKFV-MDY 164


>SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 226

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +1

Query: 388 FMNVVPNLLILVPIFLFALLHAASYSLTIL 477
           F+ V+PN+ +L+P F+   +  + Y L  +
Sbjct: 103 FLTVIPNIAVLIPCFIAYKITDSHYLLVAI 132


>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1010

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = -2

Query: 250 FVECRHWIVKQWEHVSNGTQHGDYADPPKSYVY--FIGNDV 134
           +VE R+ ++   EHV +  Q+ DY++   S +Y  F+  DV
Sbjct: 493 WVEARNAMLMAQEHVFDIMQNSDYSEFVNSEIYYRFLAQDV 533


>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 467

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = +1

Query: 316 SLSRDFMARFFLEDSAHYLFYSLIFMNVVPNLL 414
           S S++ +A FF+ D   YLFY+L F+  VP ++
Sbjct: 437 SPSKEILA-FFI-DQTWYLFYALFFICNVPRVI 467


>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
           Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 960

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +1

Query: 157 RSSLGGPRNHRAVYHWIR 210
           R  LG  R HRA  HWI+
Sbjct: 363 RDLLGDERVHRAAMHWIK 380


>SPCC1442.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 177

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/53 (24%), Positives = 25/53 (47%)
 Frame = +2

Query: 146 NKIDVALWGVRVITVLCTIGYVFPLFNNPVSAFYKAYSRTLRLQRCGYIKEFQ 304
           N+I  A W +  ++   T  + FP  +  + AF +     +R QR   +++ Q
Sbjct: 94  NRIAPARWLITSLSTAATFMFCFPKTSKNIGAFVEKRFPAIRKQRMLVLEQTQ 146


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,835,494
Number of Sequences: 5004
Number of extensions: 58730
Number of successful extensions: 173
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)