Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30834.Seq
(698 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0355 - 22492162-22492311,22492414-22492698,22492798-224931... 30 2.0
07_03_0912 + 22544144-22545589 29 2.7
07_03_0629 - 20076676-20080390,20080508-20080576,20081335-20081660 29 2.7
02_02_0223 - 8021040-8021247,8022275-8022367,8022808-8023059,802... 29 2.7
11_06_0406 - 23192363-23194911,23195152-23195247,23195622-23196090 29 3.5
04_04_0529 - 25997736-25998055,25998441-25998804,25999563-259996... 28 6.2
03_03_0071 + 14257840-14257953,14259031-14259167,14259196-142592... 28 6.2
12_01_0919 - 9086879-9087064,9087842-9087923,9088357-9089553,908... 28 8.2
07_01_1116 + 10308029-10308111,10308575-10308737,10308996-103090... 28 8.2
>09_06_0355 -
22492162-22492311,22492414-22492698,22492798-22493125,
22493523-22493674,22493878-22493969,22495948-22496107
Length = 388
Score = 29.9 bits (64), Expect = 2.0
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Frame = -2
Query: 322 RGRSLVLEFFDVAAALKSQRSRVRFVECRHWIV--KQWEHVSNGTQHGDYADPPKSYVYF 149
+GR LV F+D+ ALK R+ E +V ++WE GD++ V
Sbjct: 317 KGRPLV--FYDITLALKKLHKRIFLAEIGRHVVGDREWEVYRVHLGEGDHSSLRSKIVDG 374
Query: 148 IGNDVSFQGWD 116
+ N GWD
Sbjct: 375 VTN--MLMGWD 383
>07_03_0912 + 22544144-22545589
Length = 481
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +2
Query: 530 RVPVAEHPSGPRALAEIVLXPVVLHHGHC-SVTAGLMSP 643
R+P EHP+G A E + V H H + AGL SP
Sbjct: 71 RLPAVEHPTGCEATEEFMSRYVERHAHHVKAAIAGLASP 109
>07_03_0629 - 20076676-20080390,20080508-20080576,20081335-20081660
Length = 1369
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = -2
Query: 568 RPRPGRMFRDWNSTREMSRRP 506
RPRP R R+ NST+EM RP
Sbjct: 80 RPRPCREARELNSTQEMGGRP 100
>02_02_0223 -
8021040-8021247,8022275-8022367,8022808-8023059,
8023143-8023597,8023667-8023983,8024019-8024298,
8024423-8024728,8024762-8025130,8025216-8025455
Length = 839
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = -2
Query: 226 VKQWEHVSNGTQHGDYADPPKSYVYFIGND-VSFQGW 119
VK W+HVSNG + + + K + + G++ S++GW
Sbjct: 172 VKDWDHVSNGDKEVLWKELKKIFQFPDGSEAASWRGW 208
>11_06_0406 - 23192363-23194911,23195152-23195247,23195622-23196090
Length = 1037
Score = 29.1 bits (62), Expect = 3.5
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +1
Query: 598 TSSWALFGHCGLDES 642
T WALF HCG+D+S
Sbjct: 957 TIIWALFSHCGIDKS 971
>04_04_0529 - 25997736-25998055,25998441-25998804,25999563-25999675,
25999880-25999989,26000155-26000311,26000390-26000915,
26001101-26001265,26002470-26002589,26003022-26003093,
26003422-26003499,26003965-26004057,26004491-26004647,
26005351-26005589,26006907-26007050,26007637-26007666,
26010610-26010993,26011486-26011554,26012353-26012418,
26013166-26013255,26013583-26013628,26014318-26014419,
26014552-26014694
Length = 1195
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -3
Query: 237 DTGLLNNGNTYPMVHSTVITRTPQRATSILL 145
DT +N+GNT P + T+ + TP + T L+
Sbjct: 974 DTTTVNSGNTEPSSYVTLFSNTPGKLTKELV 1004
>03_03_0071 +
14257840-14257953,14259031-14259167,14259196-14259246,
14260396-14260499,14260887-14261020
Length = 179
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +1
Query: 352 EDSAHYLFYSLIFMNVVPNLLILVPIFLFALLHA 453
ED +L + LIFM + +LIL +F+ + HA
Sbjct: 71 EDHGQFLSHVLIFMEPMNVILILKTLFVITISHA 104
>12_01_0919 -
9086879-9087064,9087842-9087923,9088357-9089553,
9089598-9089961,9090086-9090188,9090234-9090479
Length = 725
Score = 27.9 bits (59), Expect = 8.2
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = -2
Query: 226 VKQWEHVSNGTQHGDYADPPKSYVYFIGNDVS 131
VK W+HVSNG + + + K + + G++++
Sbjct: 146 VKDWDHVSNGDKEVLWKELKKIFQFLDGSEIA 177
>07_01_1116 +
10308029-10308111,10308575-10308737,10308996-10309062,
10309120-10309375,10309658-10309781,10310039-10310077
Length = 243
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +3
Query: 201 LDTCSHCLTIQCRHSTKRTRERCDFSAAATSKNSSTRDL 317
L CSH + I+C R E C F + K +RDL
Sbjct: 175 LPNCSHAMCIKCYRDWYRRSESCPF-CRGSLKRIRSRDL 212
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,341,866
Number of Sequences: 37544
Number of extensions: 417570
Number of successful extensions: 1149
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1149
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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