Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30834.Seq
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35197| Best HMM Match : SAP (HMM E-Value=3.2)                       30   1.6  
SB_19648| Best HMM Match : HEAT (HMM E-Value=5.1e-05)                  29   2.7  
SB_34069| Best HMM Match : ARID (HMM E-Value=4.8e-14)                  29   4.8  

>SB_35197| Best HMM Match : SAP (HMM E-Value=3.2)
          Length = 323

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
 Frame = +3

Query: 207 TCSHCLTIQCRHSTK-----RTRERCDFSAAATSKNSSTRDLPLAGFHGEVLPGGQRSLF 371
           TC HC  I  R+ST       T      +AAA+S +SS+       +H   L    ++L+
Sbjct: 165 TCQHCWRILARNSTVIIIIIITSSSSSSAAAASSSSSSSSSSSHHHYHRHHLHHHHKALY 224

Query: 372 ILFTHFHERRAQ--FVNIGANLFICA 443
            L  H     AQ  + N G+ L  CA
Sbjct: 225 KLRQHTPTLLAQQCWRNTGSELGRCA 250


>SB_19648| Best HMM Match : HEAT (HMM E-Value=5.1e-05)
          Length = 485

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = -2

Query: 583 HDLGERPRPGRMFRDWNSTREMSRRPPTTNFDQEYQG*SRNTKRRVAAQIKR-LAPILTN 407
           HD G   RP R F D  + +  +++P  T  D+E+   S  TKR     ++R +  ++  
Sbjct: 416 HDTGMADRPVRQFMDDPNIKWRTQKPDYTKADKEFL--SGVTKRHPKGSLERTVEDLVKT 473

Query: 406 W 404
           W
Sbjct: 474 W 474


>SB_34069| Best HMM Match : ARID (HMM E-Value=4.8e-14)
          Length = 1774

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = -1

Query: 554  KDVPRLELDQGDEQTTTHNEF*PRVSRIVKEYEAACSSANKKIGTNINKLGTTFMKMS 381
            K+VP++    G  +TT H    P VS+     + +  +  +K GT  +K  T++ K S
Sbjct: 917  KEVPKISSSHGSHETTPHINGAP-VSKTSNSTQNSTEATTRKTGTPTSK--TSYSKQS 971


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,658,989
Number of Sequences: 59808
Number of extensions: 456710
Number of successful extensions: 1432
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1430
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)