Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30832.Seq
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein L12.1/L12A|...    97   1e-21
SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein L12...    97   1e-21

>SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein
           L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 165

 Score = 97.5 bits (232), Expect = 1e-21
 Identities = 44/86 (51%), Positives = 62/86 (72%)
 Frame = +3

Query: 252 KDWKGLKITVQLTVQNRQAXIAVVPXAAXXXIRAXXXPPRDRXKQXNIXHNGNISLXDVI 431
           KDWKGL++TV+LT+QNRQA ++VVP A+   I+A   P RDR K  N+ H+GN+SL ++I
Sbjct: 51  KDWKGLRVTVKLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEII 110

Query: 432 GIAXIXRNRSMXRYLXXSVKEILXTA 509
            +A   R +S+ + L  +VKEIL TA
Sbjct: 111 EVARTMRFKSLAKELSGTVKEILGTA 136



 Score = 75.8 bits (178), Expect = 4e-15
 Identities = 34/57 (59%), Positives = 41/57 (71%)
 Frame = +1

Query: 103 MPPKFXPNEIKIVNLRCVGGEXGATSSLXPKIGPLGLSPKXVGDDIXKXTRTGRXSR 273
           MPPKF PNE+K + +R VGGE    S+L PKIGPLGLSPK VG+DI K T+  +  R
Sbjct: 1   MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATKDWKGLR 57


>SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein
           L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 165

 Score = 97.5 bits (232), Expect = 1e-21
 Identities = 44/86 (51%), Positives = 62/86 (72%)
 Frame = +3

Query: 252 KDWKGLKITVQLTVQNRQAXIAVVPXAAXXXIRAXXXPPRDRXKQXNIXHNGNISLXDVI 431
           KDWKGL++TV+LT+QNRQA ++VVP A+   I+A   P RDR K  N+ H+GN+SL ++I
Sbjct: 51  KDWKGLRVTVKLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEII 110

Query: 432 GIAXIXRNRSMXRYLXXSVKEILXTA 509
            +A   R +S+ + L  +VKEIL TA
Sbjct: 111 EVARTMRFKSLAKELSGTVKEILGTA 136



 Score = 75.8 bits (178), Expect = 4e-15
 Identities = 34/57 (59%), Positives = 41/57 (71%)
 Frame = +1

Query: 103 MPPKFXPNEIKIVNLRCVGGEXGATSSLXPKIGPLGLSPKXVGDDIXKXTRTGRXSR 273
           MPPKF PNE+K + +R VGGE    S+L PKIGPLGLSPK VG+DI K T+  +  R
Sbjct: 1   MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATKDWKGLR 57


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,571,668
Number of Sequences: 5004
Number of extensions: 21467
Number of successful extensions: 41
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)