Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30832.Seq
         (548 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1026 + 30214437-30214937                                        107   8e-24
02_05_0416 + 28791512-28792012                                        103   9e-23
11_04_0054 - 12895574-12895840,12906985-12908121,12908274-12908591     28   4.3  
06_03_1069 - 27345207-27345488,27345746-27346078,27346252-273470...    28   5.6  

>04_04_1026 + 30214437-30214937
          Length = 166

 Score =  107 bits (256), Expect = 8e-24
 Identities = 53/85 (62%), Positives = 63/85 (74%)
 Frame = +3

Query: 252 KDWKGLKITVQLTVQNRQAXIAVVPXAAXXXIRAXXXPPRDRXKQXNIXHNGNISLXDVI 431
           KDWKGL++TV+LTVQNRQA ++VVP AA   I+A   P RDR K  NI H+GNISL DVI
Sbjct: 52  KDWKGLRVTVKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHSGNISLDDVI 111

Query: 432 GIAXIXRNRSMXRYLXXSVKEILXT 506
            IA I RNRSM + +  +VKEIL T
Sbjct: 112 EIARIMRNRSMAKEMAGTVKEILGT 136



 Score = 68.5 bits (160), Expect = 3e-12
 Identities = 31/50 (62%), Positives = 36/50 (72%)
 Frame = +1

Query: 103 MPPKFXPNEIKIVNLRCVGGEXGATSSLXPKIGPLGLSPKXVGDDIXKXT 252
           MPPK  P ++  V +R  GGE GA SSL PKIGPLGLSPK +G+DI K T
Sbjct: 1   MPPKLDPTQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKET 50


>02_05_0416 + 28791512-28792012
          Length = 166

 Score =  103 bits (247), Expect = 9e-23
 Identities = 51/85 (60%), Positives = 62/85 (72%)
 Frame = +3

Query: 252 KDWKGLKITVQLTVQNRQAXIAVVPXAAXXXIRAXXXPPRDRXKQXNIXHNGNISLXDVI 431
           KDWKGL++TV+LTVQNRQA ++VVP AA   I+A   P RDR K  NI H+GNISL DVI
Sbjct: 52  KDWKGLRVTVKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHSGNISLDDVI 111

Query: 432 GIAXIXRNRSMXRYLXXSVKEILXT 506
            IA + R RSM + +  +VKEIL T
Sbjct: 112 EIARVMRPRSMAKEMAGTVKEILGT 136



 Score = 68.5 bits (160), Expect = 3e-12
 Identities = 31/50 (62%), Positives = 36/50 (72%)
 Frame = +1

Query: 103 MPPKFXPNEIKIVNLRCVGGEXGATSSLXPKIGPLGLSPKXVGDDIXKXT 252
           MPPK  P ++  V +R  GGE GA SSL PKIGPLGLSPK +G+DI K T
Sbjct: 1   MPPKLDPTQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKET 50


>11_04_0054 - 12895574-12895840,12906985-12908121,12908274-12908591
          Length = 573

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = -2

Query: 271 LXPFQSLXPWXCHHPXFXETXQEXRFXGPKMM 176
           + PF++L  W C  P F +  +E +  G +++
Sbjct: 407 MAPFEALYGWRCRTPLFWDQTRERQLFGTEVL 438


>06_03_1069 -
           27345207-27345488,27345746-27346078,27346252-27347041,
           27347153-27347351,27347522-27347667,27347823-27348094,
           27348161-27348262,27348351-27348470,27348576-27348729,
           27348986-27349114,27349554-27349900
          Length = 957

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -3

Query: 120 VKLRGHFVDYLVQLYTIITLNPNGWVWIPQ 31
           V LR H    L  L  +   +P  W+WI Q
Sbjct: 81  VSLRSHLASVLQSLSQVRPRSPASWIWISQ 110


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,806,838
Number of Sequences: 37544
Number of extensions: 148062
Number of successful extensions: 240
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)