Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30832.Seq
         (548 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19611| Best HMM Match : No HMM Matches (HMM E-Value=.)             106   1e-23
SB_33082| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  

>SB_19611| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 166

 Score =  106 bits (254), Expect = 1e-23
 Identities = 51/85 (60%), Positives = 62/85 (72%)
 Frame = +3

Query: 252 KDWKGLKITVQLTVQNRQAXIAVVPXAAXXXIRAXXXPPRDRXKQXNIXHNGNISLXDVI 431
           +DWKGLKITV LT+QNRQA ++VVP A+   I+A   PPRDR K  NI HNGNI+L DV 
Sbjct: 51  QDWKGLKITVCLTIQNRQAKVSVVPSASSLIIKALKEPPRDRKKVKNIKHNGNITLDDVT 110

Query: 432 GIAXIXRNRSMXRYLXXSVKEILXT 506
            +A + R RSM R+L  +VKEIL T
Sbjct: 111 NVAKVMRPRSMARHLSGTVKEILGT 135



 Score = 85.8 bits (203), Expect = 2e-17
 Identities = 39/51 (76%), Positives = 42/51 (82%)
 Frame = +1

Query: 103 MPPKFXPNEIKIVNLRCVGGEXGATSSLXPKIGPLGLSPKXVGDDIXKXTR 255
           MPPKF PNEI+ V LRC GGE GAT+SL PKIGPLGLSPK VGDDI K T+
Sbjct: 1   MPPKFDPNEIQYVYLRCTGGEVGATASLAPKIGPLGLSPKKVGDDIAKATQ 51



 Score = 28.3 bits (60), Expect = 4.4
 Identities = 10/13 (76%), Positives = 12/13 (92%)
 Frame = +2

Query: 509 QSVGCTLEGXAPH 547
           QSVGCT++G APH
Sbjct: 137 QSVGCTVDGMAPH 149


>SB_33082| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 78

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 16/52 (30%), Positives = 22/52 (42%)
 Frame = +3

Query: 252 KDWKGLKITVQLTVQNRQAXIAVVPXAAXXXIRAXXXPPRDRXKQXNIXHNG 407
           K + G+      T   +QA IAV P      +R    PP D   Q  + H+G
Sbjct: 7   KQFAGVSNNPAYTATKKQAIIAV-PPVTTSNLRGPYLPPADADNQIFLPHHG 57


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,065,390
Number of Sequences: 59808
Number of extensions: 163200
Number of successful extensions: 187
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)