Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30832.Seq
         (548 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82274-1|CAB05226.1|  165|Caenorhabditis elegans Hypothetical pr...    94   7e-20
Z98866-5|CAB11548.1|  436|Caenorhabditis elegans Hypothetical pr...    33   0.18 
AC024826-13|AAF60794.2|  305|Caenorhabditis elegans Serpentine r...    27   6.7  

>Z82274-1|CAB05226.1|  165|Caenorhabditis elegans Hypothetical
           protein JC8.3a protein.
          Length = 165

 Score = 93.9 bits (223), Expect = 7e-20
 Identities = 45/86 (52%), Positives = 59/86 (68%)
 Frame = +3

Query: 252 KDWKGLKITVQLTVQNRQAXIAVVPXAAXXXIRAXXXPPRDRXKQXNIXHNGNISLXDVI 431
           +DWKGLK+T +LT+QNR A I VVP AA   ++    PPRDR K  N+ HNG++++  +I
Sbjct: 51  QDWKGLKVTCKLTIQNRVAKIDVVPSAASLIVKELKEPPRDRKKVKNVKHNGDLTVDTII 110

Query: 432 GIAXIXRNRSMXRYLXXSVKEILXTA 509
            IA I R RSM + L  +VKEIL TA
Sbjct: 111 KIARIMRPRSMAKKLEGTVKEILGTA 136



 Score = 87.8 bits (208), Expect = 4e-18
 Identities = 39/60 (65%), Positives = 46/60 (76%)
 Frame = +1

Query: 103 MPPKFXPNEIKIVNLRCVGGEXGATSSLXPKIGPLGLSPKXVGDDIXKXTRTGRXSRSLC 282
           MPPKF P EIKIV LRCVGGE GATS+L PK+GPLGLSPK +G+DI K T+  +  +  C
Sbjct: 1   MPPKFDPTEIKIVYLRCVGGEVGATSALAPKVGPLGLSPKKIGEDIAKATQDWKGLKVTC 60


>Z98866-5|CAB11548.1|  436|Caenorhabditis elegans Hypothetical
           protein Y49E10.4 protein.
          Length = 436

 Score = 32.7 bits (71), Expect = 0.18
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -3

Query: 117 KLRGHFVDYLVQLYTIITLNPNGWVWIPQGYRLNVQR 7
           K R   +D L +L TI      GWVW+  G + NVQR
Sbjct: 305 KCRKQKIDMLNELATIFKKRSFGWVWMEGGAQENVQR 341


>AC024826-13|AAF60794.2|  305|Caenorhabditis elegans Serpentine
           receptor, class x protein12 protein.
          Length = 305

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 8/31 (25%), Positives = 14/31 (45%)
 Frame = -3

Query: 129 FIWVKLRGHFVDYLVQLYTIITLNPNGWVWI 37
           F+W    GH + Y  +    +  +P  W W+
Sbjct: 131 FVWSMAIGHVIPYFWRETCYVAYDPVSWTWV 161


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,831,836
Number of Sequences: 27780
Number of extensions: 121662
Number of successful extensions: 228
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)