Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30832.Seq
         (548 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g60670.1 68418.m07614 60S ribosomal protein L12 (RPL12C) 60S ...   101   3e-22
At3g53430.1 68416.m05896 60S ribosomal protein L12 (RPL12B) 60S ...    98   3e-21
At2g37190.1 68415.m04562 60S ribosomal protein L12 (RPL12A)            98   3e-21
At5g62170.1 68418.m07804 expressed protein various predicted pro...    27   8.3  

>At5g60670.1 68418.m07614 60S ribosomal protein L12 (RPL12C) 60S
           RIBOSOMAL PROTEIN L12 (like), Arabidopsis thaliana,
           PIR:T45883
          Length = 166

 Score =  101 bits (242), Expect = 3e-22
 Identities = 51/85 (60%), Positives = 60/85 (70%)
 Frame = +3

Query: 252 KDWKGLKITVQLTVQNRQAXIAVVPXAAXXXIRAXXXPPRDRXKQXNIXHNGNISLXDVI 431
           K+WKGL++TV+LTVQNRQA + VVP AA   I+A   P RDR K  NI HNGNIS  DVI
Sbjct: 52  KEWKGLRVTVKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVI 111

Query: 432 GIAXIXRNRSMXRYLXXSVKEILXT 506
            IA I R RS+ + L  +VKEIL T
Sbjct: 112 EIAKIMRPRSIAKELSGTVKEILGT 136



 Score = 68.5 bits (160), Expect = 3e-12
 Identities = 31/50 (62%), Positives = 37/50 (74%)
 Frame = +1

Query: 103 MPPKFXPNEIKIVNLRCVGGEXGATSSLXPKIGPLGLSPKXVGDDIXKXT 252
           MPPK  P++I  V +R  GGE GA SSL PKIGPLGL+PK +G+DI K T
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKET 50


>At3g53430.1 68416.m05896 60S ribosomal protein L12 (RPL12B) 60S
           RIBOSOMAL PROTEIN L12, Prunus armeniaca,
           SWISSPROT:RL12_PRUAR
          Length = 166

 Score = 98.3 bits (234), Expect = 3e-21
 Identities = 49/85 (57%), Positives = 59/85 (69%)
 Frame = +3

Query: 252 KDWKGLKITVQLTVQNRQAXIAVVPXAAXXXIRAXXXPPRDRXKQXNIXHNGNISLXDVI 431
           K+WKGL++TV+LTVQNRQA + VVP AA   I+A   P RDR K  NI HNGNIS  DV 
Sbjct: 52  KEWKGLRVTVKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVT 111

Query: 432 GIAXIXRNRSMXRYLXXSVKEILXT 506
            IA I R RS+ + L  +V+EIL T
Sbjct: 112 EIARIMRPRSIAKELSGTVREILGT 136



 Score = 68.5 bits (160), Expect = 3e-12
 Identities = 31/50 (62%), Positives = 37/50 (74%)
 Frame = +1

Query: 103 MPPKFXPNEIKIVNLRCVGGEXGATSSLXPKIGPLGLSPKXVGDDIXKXT 252
           MPPK  P++I  V +R  GGE GA SSL PKIGPLGL+PK +G+DI K T
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKET 50


>At2g37190.1 68415.m04562 60S ribosomal protein L12 (RPL12A)
          Length = 166

 Score = 98.3 bits (234), Expect = 3e-21
 Identities = 49/85 (57%), Positives = 59/85 (69%)
 Frame = +3

Query: 252 KDWKGLKITVQLTVQNRQAXIAVVPXAAXXXIRAXXXPPRDRXKQXNIXHNGNISLXDVI 431
           K+WKGL++TV+LTVQNRQA + VVP AA   I+A   P RDR K  NI HNGNIS  DV 
Sbjct: 52  KEWKGLRVTVKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVT 111

Query: 432 GIAXIXRNRSMXRYLXXSVKEILXT 506
            IA I R RS+ + L  +V+EIL T
Sbjct: 112 EIARIMRPRSIAKELSGTVREILGT 136



 Score = 68.5 bits (160), Expect = 3e-12
 Identities = 31/50 (62%), Positives = 37/50 (74%)
 Frame = +1

Query: 103 MPPKFXPNEIKIVNLRCVGGEXGATSSLXPKIGPLGLSPKXVGDDIXKXT 252
           MPPK  P++I  V +R  GGE GA SSL PKIGPLGL+PK +G+DI K T
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKET 50


>At5g62170.1 68418.m07804 expressed protein various predicted
           proteins, Arabidopsis thaliana
          Length = 703

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 274 ILXPFQSLXPWXCHHP 227
           IL P  +L PW CH+P
Sbjct: 564 ILKPHINLKPWVCHYP 579


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,482,251
Number of Sequences: 28952
Number of extensions: 118467
Number of successful extensions: 179
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)