Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30830.Seq
         (535 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein L21|Sch...   122   4e-29
SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein L21|Sc...   122   4e-29
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    29   0.58 
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    27   1.3  
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi...    26   3.1  

>SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein
           L21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 160

 Score =  122 bits (293), Expect = 4e-29
 Identities = 72/158 (45%), Positives = 87/158 (55%), Gaps = 2/158 (1%)
 Frame = +3

Query: 15  MTNSKGYRRGTRXLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVXKGMPHKVYHGK 194
           M +S G R  TR  F R FR HG I LSTY+K YKVGDIVDI+ NGAV KGMPHK YHGK
Sbjct: 1   MPHSYGIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGK 60

Query: 195 TGRVXNVTAHALGVIVNXRVAEGLYRSASXSVXXXSSTPSADKTS-LRESKRXRXXXRXP 371
           TG V NVT  ++GV++  +V    Y     +V       S  +   L   K      +  
Sbjct: 61  TGVVYNVTQSSVGVLI-YKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEA 119

Query: 372 RLPGKTVNL*RQPAPPKXAXIVSGTAXXXL-LAPIXYE 482
           +  GKTV L RQPAPP  A  VS      + L P+ Y+
Sbjct: 120 KAQGKTVQLRRQPAPPATAHFVSTENNEPVTLHPVAYD 157


>SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein
           L21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 160

 Score =  122 bits (293), Expect = 4e-29
 Identities = 72/158 (45%), Positives = 87/158 (55%), Gaps = 2/158 (1%)
 Frame = +3

Query: 15  MTNSKGYRRGTRXLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVXKGMPHKVYHGK 194
           M +S G R  TR  F R FR HG I LSTY+K YKVGDIVDI+ NGAV KGMPHK YHGK
Sbjct: 1   MPHSYGIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGK 60

Query: 195 TGRVXNVTAHALGVIVNXRVAEGLYRSASXSVXXXSSTPSADKTS-LRESKRXRXXXRXP 371
           TG V NVT  ++GV++  +V    Y     +V       S  +   L   K      +  
Sbjct: 61  TGVVYNVTQSSVGVLI-YKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEA 119

Query: 372 RLPGKTVNL*RQPAPPKXAXIVSGTAXXXL-LAPIXYE 482
           +  GKTV L RQPAPP  A  VS      + L P+ Y+
Sbjct: 120 KAQGKTVQLRRQPAPPAKAHFVSTENNEPVTLHPVAYD 157


>SPAC926.09c |fas1||fatty acid synthase beta subunit
            Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 28.7 bits (61), Expect = 0.58
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = -1

Query: 262  PSATRLLTITPRA*AVTLXTRPVXPWYTLCGIPFXTAPLPLMSTMSPTLYTFMYVES 92
            P A R L   P A    L T+    +Y+LC  PF   P+P +  +  T   +   +S
Sbjct: 980  PVAARFLDAYPEASTQDLNTQDAQFFYSLCSNPF-QKPVPFIPAIDDTFEFYFKKDS 1035


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -1

Query: 127 SPTLYTFMYVESGIVPCVRNLRANKXLVPRR*PLEFVIF 11
           S  L+ F+ +   IVPC+  +  +  ++P R   EF+ F
Sbjct: 743 SDILHIFLKLIHPIVPCISGVMLHSKIIPERKNSEFLSF 781


>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
           Usp104|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 695

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = +2

Query: 86  YSALHVHESVQSWRHCRHQRQWCSSKGYATQSIPW 190
           +  L  H    SW   +  R+ C +KGY     PW
Sbjct: 199 FKFLDSHNVNPSWTWEQTVRELCDAKGYYVMKDPW 233


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,556,610
Number of Sequences: 5004
Number of extensions: 22982
Number of successful extensions: 69
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)