Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30830.Seq
         (535 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0290 + 2246791-2247027,2248089-2248346                          120   6e-28
10_08_0310 - 16669565-16669822,16670558-16670794                      118   4e-27
01_01_0167 + 1422344-1424260,1424338-1424472,1424568-1424990,142...    28   4.1  
08_01_0987 + 9979651-9979746,9979818-9980058,9980947-9981090,998...    28   5.4  
03_05_0412 + 23993452-23994068,23996249-23996350,23996799-239969...    27   7.2  

>03_01_0290 + 2246791-2247027,2248089-2248346
          Length = 164

 Score =  120 bits (290), Expect = 6e-28
 Identities = 66/159 (41%), Positives = 89/159 (55%), Gaps = 1/159 (0%)
 Frame = +3

Query: 15  MTNSKGYRRGTRXLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVXKGMPHKVYHGK 194
           M    G R  TR LFAR FR  G IPL+TY++ YK+GD VD++ NGAV KGMPHK YHG+
Sbjct: 1   MPAGHGLRARTRDLFARPFRKKGYIPLTTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60

Query: 195 TGRVXNVTAHALGVIVNXRVAEGLYRS-ASXSVXXXSSTPSADKTSLRESKRXRXXXRXP 371
           TGRV NVT  A+GV +N +V   + R      V     +   ++  LR+ K  +      
Sbjct: 61  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCTEELRLRKIKNDQ-LKADA 119

Query: 372 RLPGKTVNL*RQPAPPKXAXIVSGTAXXXLLAPIXYEFV 488
           +  G+ ++  RQP  PK   +V G A    + PI Y+ V
Sbjct: 120 KARGEVISTKRQPEGPKPGFMVEG-ATLETVTPIPYDVV 157


>10_08_0310 - 16669565-16669822,16670558-16670794
          Length = 164

 Score =  118 bits (283), Expect = 4e-27
 Identities = 65/159 (40%), Positives = 89/159 (55%), Gaps = 1/159 (0%)
 Frame = +3

Query: 15  MTNSKGYRRGTRXLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVXKGMPHKVYHGK 194
           M    G R  TR LFAR FR  G IPL+TY++ YK+G+ VD++ NGAV KGMPHK YHG+
Sbjct: 1   MPAGHGLRARTRDLFARPFRKKGYIPLTTYLRTYKIGEHVDVKVNGAVHKGMPHKFYHGR 60

Query: 195 TGRVXNVTAHALGVIVNXRVAEGLYRS-ASXSVXXXSSTPSADKTSLRESKRXRXXXRXP 371
           TGRV NVT  A+GV +N +V   + R      V     +   ++  LR+ K  +      
Sbjct: 61  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCTEEFRLRKIKNDQ-LKADA 119

Query: 372 RLPGKTVNL*RQPAPPKXAXIVSGTAXXXLLAPIXYEFV 488
           +  G+ ++  RQP  PK   +V G A    + PI Y+ V
Sbjct: 120 KARGEVISTKRQPQGPKPGFMVEG-ATLETVTPIPYDVV 157


>01_01_0167 +
           1422344-1424260,1424338-1424472,1424568-1424990,
           1425183-1425252,1425356-1425495,1425620-1425679,
           1425776-1425931,1426272-1426541
          Length = 1056

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +3

Query: 114 YKVGDIVDIRGNGAVXKGMPHKVY 185
           ++ GDI+ I G+G+V K  PH++Y
Sbjct: 623 FEDGDIIVIWGDGSVSKVGPHEIY 646


>08_01_0987 +
           9979651-9979746,9979818-9980058,9980947-9981090,
           9981253-9981313,9981603-9982061,9982472-9982529,
           9983579-9983839
          Length = 439

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 196 VXPWYTLCGIPFXTAPLPLMSTMSPTL 116
           V PW T CG+ F  +P P  ++ S +L
Sbjct: 408 VQPWVTGCGVVFGPSPRPPCTSASSSL 434


>03_05_0412 +
           23993452-23994068,23996249-23996350,23996799-23996994,
           23997075-23997259,23997394-23997498,23997625-23997722,
           23997832-23998067,23998314-23998382,23999768-23999833,
           24000513-24000611,24000688-24000750
          Length = 611

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -1

Query: 190 PWYTLCGIPFXTAPLPLMSTM 128
           P  T CGI F TA LPL+  M
Sbjct: 430 PNVTTCGIQFATAQLPLLQLM 450


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,028,273
Number of Sequences: 37544
Number of extensions: 173727
Number of successful extensions: 453
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)