Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30830.Seq
         (535 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0)                      128   3e-30
SB_53681| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_23750| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_6010| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.5  
SB_57637| Best HMM Match : SRP40_C (HMM E-Value=2.3e-08)               27   7.3  

>SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0)
          Length = 768

 Score =  128 bits (309), Expect = 3e-30
 Identities = 57/80 (71%), Positives = 67/80 (83%)
 Frame = +3

Query: 15  MTNSKGYRRGTRXLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVXKGMPHKVYHGK 194
           MTN+KGYRRGTR +F+++FR  G   LSTY+K YKVGDIVD++ NGAV KGMPHKVYHGK
Sbjct: 423 MTNTKGYRRGTRYMFSKKFRHRGVEHLSTYLKCYKVGDIVDVKANGAVQKGMPHKVYHGK 482

Query: 195 TGRVXNVTAHALGVIVNXRV 254
           TGRV NVT  ALGV+VN +V
Sbjct: 483 TGRVYNVTKRALGVVVNKQV 502


>SB_53681| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 171

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +2

Query: 29  GLPPRHQGLVRSQVPHTWNYSALHVHESVQSWRHCRHQRQW 151
           G+   H G+ R+    TWNYS +  + S  +W +    R +
Sbjct: 129 GMTLYHSGMTRNYPGMTWNYSGMTRNYSGMTWNYSGMTRNY 169



 Score = 28.3 bits (60), Expect = 4.2
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +2

Query: 29  GLPPRHQGLVRSQVPHTWNYSALHVHESVQSWRHCRHQRQW 151
           G+   + G++R+    TWNYS +  + S  +W +    R +
Sbjct: 87  GMTWNYSGMIRNYPGMTWNYSGMTRNYSGMTWNYSGMTRNY 127


>SB_23750| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 185

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +2

Query: 29  GLPPRHQGLVRSQVPHTWNYSALHVHESVQSWRHCRHQRQW 151
           G+   H G+ R+    TWNYS +  + S  +W +    R +
Sbjct: 129 GMTLYHSGMTRNYPGMTWNYSGMTRNYSGMTWNYSGMTRNY 169



 Score = 28.3 bits (60), Expect = 4.2
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +2

Query: 29  GLPPRHQGLVRSQVPHTWNYSALHVHESVQSWRHCRHQRQW 151
           G+   + G++R+    TWNYS +  + S  +W +    R +
Sbjct: 87  GMTWNYSGMIRNYPGMTWNYSGMTRNYSGMTWNYSGMTRNY 127


>SB_6010| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2202

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
 Frame = +3

Query: 177  KVYHGKTGRVXNVT-AHALGVIVNXRV-AEGLYRSASXSVXXXSSTPSADKTSLRESKRX 350
            ++ HG +    +V  AH +  +   R    GL  + +  +   SSTPS++K S    K  
Sbjct: 1891 RIPHGHSDDAADVAVAHCIANVQGPRTRTSGLNAAGTCHLQRRSSTPSSNKDSFEYKKHK 1950

Query: 351  RXXXRXPRL 377
                R  R+
Sbjct: 1951 EKSIRSSRI 1959


>SB_57637| Best HMM Match : SRP40_C (HMM E-Value=2.3e-08)
          Length = 654

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
 Frame = -1

Query: 376 SLGFLXXXLILFDSLKEVLSALGVLXMXNTDXDAL--RYNPSATRLLTITPRA*AVTLXT 203
           S+ F     I  D+LK  L +  +     TD + +  +YN + + LL    +    T+  
Sbjct: 227 SVSFRKIKSINIDTLKNDLRSSELHHSPKTDLNGIVKKYNQTLSTLLDSHAQVKIKTITN 286

Query: 202 RPVXPWY 182
           RP  PW+
Sbjct: 287 RPRLPWF 293


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,453,115
Number of Sequences: 59808
Number of extensions: 191545
Number of successful extensions: 512
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1203486867
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)