BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= psV30830.Seq (535 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0) 128 3e-30 SB_53681| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4 SB_23750| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4 SB_6010| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5 SB_57637| Best HMM Match : SRP40_C (HMM E-Value=2.3e-08) 27 7.3 >SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0) Length = 768 Score = 128 bits (309), Expect = 3e-30 Identities = 57/80 (71%), Positives = 67/80 (83%) Frame = +3 Query: 15 MTNSKGYRRGTRXLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVXKGMPHKVYHGK 194 MTN+KGYRRGTR +F+++FR G LSTY+K YKVGDIVD++ NGAV KGMPHKVYHGK Sbjct: 423 MTNTKGYRRGTRYMFSKKFRHRGVEHLSTYLKCYKVGDIVDVKANGAVQKGMPHKVYHGK 482 Query: 195 TGRVXNVTAHALGVIVNXRV 254 TGRV NVT ALGV+VN +V Sbjct: 483 TGRVYNVTKRALGVVVNKQV 502 >SB_53681| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 171 Score = 29.1 bits (62), Expect = 2.4 Identities = 12/41 (29%), Positives = 20/41 (48%) Frame = +2 Query: 29 GLPPRHQGLVRSQVPHTWNYSALHVHESVQSWRHCRHQRQW 151 G+ H G+ R+ TWNYS + + S +W + R + Sbjct: 129 GMTLYHSGMTRNYPGMTWNYSGMTRNYSGMTWNYSGMTRNY 169 Score = 28.3 bits (60), Expect = 4.2 Identities = 11/41 (26%), Positives = 21/41 (51%) Frame = +2 Query: 29 GLPPRHQGLVRSQVPHTWNYSALHVHESVQSWRHCRHQRQW 151 G+ + G++R+ TWNYS + + S +W + R + Sbjct: 87 GMTWNYSGMIRNYPGMTWNYSGMTRNYSGMTWNYSGMTRNY 127 >SB_23750| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 185 Score = 29.1 bits (62), Expect = 2.4 Identities = 12/41 (29%), Positives = 20/41 (48%) Frame = +2 Query: 29 GLPPRHQGLVRSQVPHTWNYSALHVHESVQSWRHCRHQRQW 151 G+ H G+ R+ TWNYS + + S +W + R + Sbjct: 129 GMTLYHSGMTRNYPGMTWNYSGMTRNYSGMTWNYSGMTRNY 169 Score = 28.3 bits (60), Expect = 4.2 Identities = 11/41 (26%), Positives = 21/41 (51%) Frame = +2 Query: 29 GLPPRHQGLVRSQVPHTWNYSALHVHESVQSWRHCRHQRQW 151 G+ + G++R+ TWNYS + + S +W + R + Sbjct: 87 GMTWNYSGMIRNYPGMTWNYSGMTRNYSGMTWNYSGMTRNY 127 >SB_6010| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 2202 Score = 27.9 bits (59), Expect = 5.5 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 2/69 (2%) Frame = +3 Query: 177 KVYHGKTGRVXNVT-AHALGVIVNXRV-AEGLYRSASXSVXXXSSTPSADKTSLRESKRX 350 ++ HG + +V AH + + R GL + + + SSTPS++K S K Sbjct: 1891 RIPHGHSDDAADVAVAHCIANVQGPRTRTSGLNAAGTCHLQRRSSTPSSNKDSFEYKKHK 1950 Query: 351 RXXXRXPRL 377 R R+ Sbjct: 1951 EKSIRSSRI 1959 >SB_57637| Best HMM Match : SRP40_C (HMM E-Value=2.3e-08) Length = 654 Score = 27.5 bits (58), Expect = 7.3 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 2/67 (2%) Frame = -1 Query: 376 SLGFLXXXLILFDSLKEVLSALGVLXMXNTDXDAL--RYNPSATRLLTITPRA*AVTLXT 203 S+ F I D+LK L + + TD + + +YN + + LL + T+ Sbjct: 227 SVSFRKIKSINIDTLKNDLRSSELHHSPKTDLNGIVKKYNQTLSTLLDSHAQVKIKTITN 286 Query: 202 RPVXPWY 182 RP PW+ Sbjct: 287 RPRLPWF 293 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,453,115 Number of Sequences: 59808 Number of extensions: 191545 Number of successful extensions: 512 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 439 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 509 length of database: 16,821,457 effective HSP length: 78 effective length of database: 12,156,433 effective search space used: 1203486867 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -