Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30830.Seq
         (535 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L15188-7|AAA27951.1|  161|Caenorhabditis elegans Ribosomal prote...   122   1e-28
Z83244-6|CAD18877.1|  502|Caenorhabditis elegans Hypothetical pr...    32   0.30 
Z83244-5|CAB54315.1|  568|Caenorhabditis elegans Hypothetical pr...    32   0.30 
Z83244-4|CAB54314.1|  562|Caenorhabditis elegans Hypothetical pr...    32   0.30 
Z92775-2|CAB07162.2|  382|Caenorhabditis elegans Hypothetical pr...    27   6.4  
Z92775-1|CAB07161.2|  379|Caenorhabditis elegans Hypothetical pr...    27   6.4  

>L15188-7|AAA27951.1|  161|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 21 protein.
          Length = 161

 Score =  122 bits (295), Expect = 1e-28
 Identities = 73/162 (45%), Positives = 91/162 (56%), Gaps = 3/162 (1%)
 Frame = +3

Query: 15  MTNSKGYRRGTRXLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVXKGMPHKVYHGK 194
           MTNSKG RRGTR +FAR FR HG   LSTY   YK GD+VDI+ NGA  KGMP K YHG+
Sbjct: 1   MTNSKGLRRGTRYMFARDFRKHGVEHLSTYYTQYKRGDLVDIKTNGAFQKGMPFKAYHGR 60

Query: 195 TGRVXNVTAHALGVIVNXRVAEGLYRSASXSVXXXSSTPSADKTS-LRESKRXRXXXRXP 371
           TGR+ NVT  A+G+IVN RV  G       ++      PS  +T  L   K      +  
Sbjct: 61  TGRIFNVTRGAVGIIVNKRV-RGNILPKRINIRIEHIKPSKCRTDFLNRVKSNDEKRKAA 119

Query: 372 RLPGKTV-NL*RQPAPPKXA-XIVSGTAXXXLLAPIXYEFVA 491
           +  G+ V  L R P  P+ A  + +      LLAP+ +E VA
Sbjct: 120 KSAGQPVPALKRLPVAPRGAHTVTTQNNEPELLAPLRFEIVA 161


>Z83244-6|CAD18877.1|  502|Caenorhabditis elegans Hypothetical
           protein W06F12.2c protein.
          Length = 502

 Score = 31.9 bits (69), Expect = 0.30
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -1

Query: 199 PVXPWYTLCGIPFXTAPLPLMSTMSPTLYTFMYVESGIVPCVRNLR 62
           PV P Y+  G+P    PLP     +P     M V+  + P V+NLR
Sbjct: 226 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 271


>Z83244-5|CAB54315.1|  568|Caenorhabditis elegans Hypothetical
           protein W06F12.2b protein.
          Length = 568

 Score = 31.9 bits (69), Expect = 0.30
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -1

Query: 199 PVXPWYTLCGIPFXTAPLPLMSTMSPTLYTFMYVESGIVPCVRNLR 62
           PV P Y+  G+P    PLP     +P     M V+  + P V+NLR
Sbjct: 226 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 271


>Z83244-4|CAB54314.1|  562|Caenorhabditis elegans Hypothetical
           protein W06F12.2a protein.
          Length = 562

 Score = 31.9 bits (69), Expect = 0.30
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -1

Query: 199 PVXPWYTLCGIPFXTAPLPLMSTMSPTLYTFMYVESGIVPCVRNLR 62
           PV P Y+  G+P    PLP     +P     M V+  + P V+NLR
Sbjct: 220 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 265


>Z92775-2|CAB07162.2|  382|Caenorhabditis elegans Hypothetical
           protein C06H5.2 protein.
          Length = 382

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = -1

Query: 352 LILFDSLKEVLSALGVL 302
           LILFD+LK VL ++GVL
Sbjct: 200 LILFDALKNVLQSVGVL 216


>Z92775-1|CAB07161.2|  379|Caenorhabditis elegans Hypothetical
           protein C06H5.1 protein.
          Length = 379

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = -1

Query: 352 LILFDSLKEVLSALGVL 302
           LILFD+LK VL ++GVL
Sbjct: 200 LILFDALKNVLQSVGVL 216


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,880,923
Number of Sequences: 27780
Number of extensions: 135756
Number of successful extensions: 332
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 331
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)