Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30830.Seq
(535 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g09690.1 68414.m01088 60S ribosomal protein L21 (RPL21C) Simi... 122 2e-28
At1g09590.1 68414.m01076 60S ribosomal protein L21 (RPL21A) Simi... 122 2e-28
At1g57860.1 68414.m06565 60S ribosomal protein L21 similar to 60... 121 3e-28
At1g57660.1 68414.m06543 60S ribosomal protein L21 (RPL21E) simi... 121 3e-28
At4g24350.1 68417.m03494 phosphorylase family protein contains P... 29 1.9
At1g62330.1 68414.m07033 expressed protein contains Pfam PF03138... 29 1.9
At5g41220.1 68418.m05009 glutathione S-transferase, putative sim... 27 5.9
At5g41240.1 68418.m05011 glutathione S-transferase, putative sim... 27 7.9
>At1g09690.1 68414.m01088 60S ribosomal protein L21 (RPL21C) Similar
to ribosomal protein L21 (gb|L38826). ESTs
gb|AA395597,gb|ATTS5197 come from this gene
Length = 164
Score = 122 bits (294), Expect = 2e-28
Identities = 66/159 (41%), Positives = 89/159 (55%), Gaps = 1/159 (0%)
Frame = +3
Query: 15 MTNSKGYRRGTRXLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVXKGMPHKVYHGK 194
M G R TR LFAR FR G IPLSTY++ +KVGD VD++ NGA+ KGMPHK YHG+
Sbjct: 1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60
Query: 195 TGRVXNVTAHALGVIVNXRVAEGLYRS-ASXSVXXXSSTPSADKTSLRESKRXRXXXRXP 371
TGR+ NVT A+GV VN ++ + R V + A++ LR+ K
Sbjct: 61 TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDE-LKAAA 119
Query: 372 RLPGKTVNL*RQPAPPKXAXIVSGTAXXXLLAPIXYEFV 488
+ G+T++ RQP PK +V G + PI Y+ V
Sbjct: 120 KANGETISTKRQPKGPKPGFMVEGMT-LETVTPIPYDVV 157
>At1g09590.1 68414.m01076 60S ribosomal protein L21 (RPL21A) Similar
to L21 family of ribosomal protein; amino acid sequence
is identical to F21M12.8
Length = 164
Score = 122 bits (294), Expect = 2e-28
Identities = 66/159 (41%), Positives = 89/159 (55%), Gaps = 1/159 (0%)
Frame = +3
Query: 15 MTNSKGYRRGTRXLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVXKGMPHKVYHGK 194
M G R TR LFAR FR G IPLSTY++ +KVGD VD++ NGA+ KGMPHK YHG+
Sbjct: 1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60
Query: 195 TGRVXNVTAHALGVIVNXRVAEGLYRS-ASXSVXXXSSTPSADKTSLRESKRXRXXXRXP 371
TGR+ NVT A+GV VN ++ + R V + A++ LR+ K
Sbjct: 61 TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDE-LKAAA 119
Query: 372 RLPGKTVNL*RQPAPPKXAXIVSGTAXXXLLAPIXYEFV 488
+ G+T++ RQP PK +V G + PI Y+ V
Sbjct: 120 KANGETISTKRQPKGPKPGFMVEGMT-LETVTPIPYDVV 157
>At1g57860.1 68414.m06565 60S ribosomal protein L21 similar to 60S
ribosomal protein L21 GI:3885884 from [Oryza sativa]
Length = 164
Score = 121 bits (292), Expect = 3e-28
Identities = 66/159 (41%), Positives = 90/159 (56%), Gaps = 1/159 (0%)
Frame = +3
Query: 15 MTNSKGYRRGTRXLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVXKGMPHKVYHGK 194
M G R TR LFAR FR G IPLSTY++ +KVGD VD++ NGA+ KGMPHK YHG+
Sbjct: 1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60
Query: 195 TGRVXNVTAHALGVIVNXRVAEGLYRS-ASXSVXXXSSTPSADKTSLRESKRXRXXXRXP 371
TGR+ NVT A+GV VN ++ + R V + A++ LR+ K+
Sbjct: 61 TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRK-KQNDVLKADA 119
Query: 372 RLPGKTVNL*RQPAPPKXAXIVSGTAXXXLLAPIXYEFV 488
+ G+T++ RQP PK +V G + PI Y+ V
Sbjct: 120 KARGETISTKRQPKGPKPGFMVEGMT-LETVTPIPYDVV 157
>At1g57660.1 68414.m06543 60S ribosomal protein L21 (RPL21E) similar
to 60S ribosomal protein L21 GB:Q43291 GI:2851508 from
[Arabidopsis thaliana]
Length = 164
Score = 121 bits (292), Expect = 3e-28
Identities = 66/159 (41%), Positives = 90/159 (56%), Gaps = 1/159 (0%)
Frame = +3
Query: 15 MTNSKGYRRGTRXLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVXKGMPHKVYHGK 194
M G R TR LFAR FR G IPLSTY++ +KVGD VD++ NGA+ KGMPHK YHG+
Sbjct: 1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60
Query: 195 TGRVXNVTAHALGVIVNXRVAEGLYRS-ASXSVXXXSSTPSADKTSLRESKRXRXXXRXP 371
TGR+ NVT A+GV VN ++ + R V + A++ LR+ K+
Sbjct: 61 TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRK-KQNDVLKADA 119
Query: 372 RLPGKTVNL*RQPAPPKXAXIVSGTAXXXLLAPIXYEFV 488
+ G+T++ RQP PK +V G + PI Y+ V
Sbjct: 120 KARGETISTKRQPKGPKPGFMVEGMT-LETVTPIPYDVV 157
>At4g24350.1 68417.m03494 phosphorylase family protein contains Pfam
PF01048: Phosphorylase family
Length = 336
Score = 29.1 bits (62), Expect = 1.9
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 140 DVYNVSNFVHFHVRGERNSSM 78
DV+NV VHF + G N+SM
Sbjct: 114 DVFNVKGIVHFGIAGNMNNSM 134
>At1g62330.1 68414.m07033 expressed protein contains Pfam PF03138:
Plant protein family. The function of this family of
plant proteins is unknown;
Length = 672
Score = 29.1 bits (62), Expect = 1.9
Identities = 19/59 (32%), Positives = 25/59 (42%)
Frame = +3
Query: 165 GMPHKVYHGKTGRVXNVTAHALGVIVNXRVAEGLYRSASXSVXXXSSTPSADKTSLRES 341
G P K Y+G GR+ AHAL N + L+R P AD+ S + S
Sbjct: 182 GKPKKTYNGTYGRLLAYAAHALAEGQNKLEPKELWREPKDQALAWK--PCADQRSWKPS 238
>At5g41220.1 68418.m05009 glutathione S-transferase, putative
similar to emb|CAA10662
Length = 590
Score = 27.5 bits (58), Expect = 5.9
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 74 HTWNYSALHVHESVQSWRHCRHQRQWCS 157
+T NY + E +WR RH ++WCS
Sbjct: 370 YTNNYKSNFTLE--HAWRELRHSKKWCS 395
>At5g41240.1 68418.m05011 glutathione S-transferase, putative
similar to glutathione S-transferase, GST 10b
GB:CAA10662 [Arabidopsis thaliana] 37349.
Length = 591
Score = 27.1 bits (57), Expect = 7.9
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = +2
Query: 119 SWRHCRHQRQWCSS 160
+WR RH ++WCS+
Sbjct: 385 AWRELRHNKKWCST 398
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,412,886
Number of Sequences: 28952
Number of extensions: 128023
Number of successful extensions: 357
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 353
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 984125600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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