Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30829.Seq
         (598 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC062705-1|AAH62705.1|   98|Homo sapiens similar to DNA segment,...    69   2e-11
BC051802-1|AAH51802.1|   98|Homo sapiens similar to DNA segment,...    69   2e-11
BC095436-1|AAH95436.1|  108|Homo sapiens MGC71993 protein protein.     37   0.047

>BC062705-1|AAH62705.1|   98|Homo sapiens similar to DNA segment,
           Chr 11, Brigham & Womens Genetics 0434 expressed
           protein.
          Length = 98

 Score = 68.5 bits (160), Expect = 2e-11
 Identities = 32/85 (37%), Positives = 52/85 (61%)
 Frame = +1

Query: 1   GPKLSLCGLVLSVWGIIQLTLMGVFYYIRAVALLEDLPFDEKNXPHSIEDFVIEVEKGYT 180
           GPKL+ CG+VLS WG+I L ++G+F+ + +  L+ED+PF EK+  +  ++    +   Y 
Sbjct: 8   GPKLAACGIVLSAWGVIMLIMLGIFFNVHSAVLIEDVPFTEKDFENGPQN----IYNLYE 63

Query: 181 LNAQNCWXAXLLYLITLXVSGHQFC 255
             + NC+ A  LYL+   + G  FC
Sbjct: 64  QVSYNCFIAAGLYLL---LGGFSFC 85


>BC051802-1|AAH51802.1|   98|Homo sapiens similar to DNA segment,
           Chr 11, Brigham & Womens Genetics 0434 expressed
           protein.
          Length = 98

 Score = 68.5 bits (160), Expect = 2e-11
 Identities = 32/85 (37%), Positives = 52/85 (61%)
 Frame = +1

Query: 1   GPKLSLCGLVLSVWGIIQLTLMGVFYYIRAVALLEDLPFDEKNXPHSIEDFVIEVEKGYT 180
           GPKL+ CG+VLS WG+I L ++G+F+ + +  L+ED+PF EK+  +  ++    +   Y 
Sbjct: 8   GPKLAACGIVLSAWGVIMLIMLGIFFNVHSAVLIEDVPFTEKDFENGPQN----IYNLYE 63

Query: 181 LNAQNCWXAXLLYLITLXVSGHQFC 255
             + NC+ A  LYL+   + G  FC
Sbjct: 64  QVSYNCFIAAGLYLL---LGGFSFC 85


>BC095436-1|AAH95436.1|  108|Homo sapiens MGC71993 protein protein.
          Length = 108

 Score = 37.1 bits (82), Expect = 0.047
 Identities = 19/65 (29%), Positives = 36/65 (55%)
 Frame = +1

Query: 61  LMGVFYYIRAVALLEDLPFDEKNXPHSIEDFVIEVEKGYTLNAQNCWXAXLLYLITLXVS 240
           ++G+F+ + +  L+ED+PF EK+  +  ++    +   Y   + NC+ A  LYL+   + 
Sbjct: 38  MLGIFFNVHSAVLIEDVPFTEKDFENGPQN----IYNLYEQVSYNCFIAAGLYLL---LG 90

Query: 241 GHQFC 255
           G  FC
Sbjct: 91  GFSFC 95


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,792,931
Number of Sequences: 237096
Number of extensions: 1195764
Number of successful extensions: 2104
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2104
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6324506272
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)