Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30829.Seq
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68227-10|CAA92515.1|   95|Caenorhabditis elegans Hypothetical p...    64   1e-10
U97593-4|AAB52877.2|   93|Caenorhabditis elegans Hypothetical pr...    52   3e-07

>Z68227-10|CAA92515.1|   95|Caenorhabditis elegans Hypothetical
           protein F49C12.12 protein.
          Length = 95

 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 34/78 (43%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
 Frame = +1

Query: 1   GPKLSLCGLVLSVWGIIQLTLMGVFYYIRAVALLEDLPFD-EKNXPHSIEDFVIEVEKGY 177
           GPK+S   +V+SVWG+I L L+GVF+YI+AV L  DL F+     P S+      ++  Y
Sbjct: 9   GPKMSAFCMVMSVWGVIFLGLLGVFFYIQAVTLFPDLHFEGHGKVPSSV------IDAKY 62

Query: 178 TLNAQNCWXAXLLYLITL 231
              A  CW A  LY +TL
Sbjct: 63  NEKATQCWIAAGLYAVTL 80


>U97593-4|AAB52877.2|   93|Caenorhabditis elegans Hypothetical
           protein C46G7.1 protein.
          Length = 93

 Score = 52.0 bits (119), Expect = 3e-07
 Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
 Frame = +1

Query: 1   GPKLSLCGLVLSVWGIIQLTLMGVFYYIRAVALLEDLPFDEKNXPHSI-EDFVIEVEKGY 177
           GP  +   L L++WG + + ++G  +Y ++V L EDLP + K    S+  D      K Y
Sbjct: 3   GPMCTGIFLFLALWGTVFMAILGGLFYNQSVGLFEDLPKESKAMEKSLWADRTTNFNKLY 62

Query: 178 TLNAQNCWXAXLLYL 222
             NA NCW A  +Y+
Sbjct: 63  QQNAYNCWIACGVYI 77


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,299,134
Number of Sequences: 27780
Number of extensions: 189986
Number of successful extensions: 446
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)